Gene : Glyma.16G207800 G. max Wm82.a2.v1
Defline:  (1 of 5) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  2078
Name:  ? Glyma.16G207800 Secondary Identifier:  ? PAC:30561701
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G207800 0.5kb upstream 0.5kb upstream 2306 true Chr16: 36750028-36752333 Glycine max
Glyma.16G207800 0.5kb upstream 0.5kb upstream 500 false Chr16: 36751834-36752333 Glycine max
Glyma.16G207800 0.5kb downstream 0.5kb downstream 2306 true Chr16: 36749528-36751833 Glycine max
Glyma.16G207800 0.5kb downstream 0.5kb downstream 500 false Chr16: 36749528-36750027 Glycine max
Glyma.16G207800 1.0kb upstream 1.0kb upstream 2806 true Chr16: 36750028-36752833 Glycine max
Glyma.16G207800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 36751834-36752833 Glycine max
Glyma.16G207800 1.0kb downstream 1.0kb downstream 2806 true Chr16: 36749028-36751833 Glycine max
Glyma.16G207800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 36749028-36750027 Glycine max
Glyma.16G207800 2.0kb upstream 2.0kb upstream 3806 true Chr16: 36750028-36753833 Glycine max
Glyma.16G207800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 36751834-36753833 Glycine max
Glyma.16G207800 2.0kb downstream 2.0kb downstream 3806 true Chr16: 36748028-36751833 Glycine max
Glyma.16G207800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 36748028-36750027 Glycine max
Glyma.16G207800 5.0kb upstream 5.0kb upstream 6806 true Chr16: 36750028-36756833 Glycine max
Glyma.16G207800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 36751834-36756833 Glycine max
Glyma.16G207800 5.0kb downstream 5.0kb downstream 6806 true Chr16: 36745028-36751833 Glycine max
Glyma.16G207800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 36745028-36750027 Glycine max
Glyma.16G207800 10.0kb upstream 10.0kb upstream 11806 true Chr16: 36750028-36761833 Glycine max
Glyma.16G207800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 36751834-36761833 Glycine max
Glyma.16G207800 10.0kb downstream 10.0kb downstream 11806 true Chr16: 36740028-36751833 Glycine max
Glyma.16G207800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 36740028-36750027 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307449 5265 Fabidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.6707 0.0 122.65 High  
cufflinks 23.6842 0.0 63.4782 High  
cufflinks 50.2491 0.0 135.709 High  
cufflinks 57.5198 0.0 156.498 High  
cufflinks 20.1435 0.0 54.3069 High  
cufflinks 112.086 0.0 326.117 High High
cufflinks 6.31292 0.0 19.129   Low
cufflinks 77.3275 0.0 215.904 High  
cufflinks 38.4828 0.0 102.876 High  
cufflinks 59.071     High High
cufflinks 19.193     High  
cufflinks 26.511     High  
cufflinks 21.73     High  
cufflinks 3.215       Low
cufflinks 7.353     High Low
cufflinks 18.762     High  
cufflinks 108.147     High High
cufflinks 26.702     High  
cufflinks 22.924     High  
cufflinks 17.984     High  
cufflinks 24.347     High  
cufflinks 21.924     High  
cufflinks 38.386     High  
cufflinks 19.158     High  
cufflinks 18.246     High  
cufflinks 31.57     High  

0 Strain