Gene : Glyma.16G182000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10869:SF55 - OXOGLUTARATE/IRON-DEPENDENT OXYGENASE Genomic Order:  1820
Name:  ? Glyma.16G182000 Secondary Identifier:  ? PAC:30559581
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G182000 0.5kb upstream 0.5kb upstream 4527 true Chr16: 34284454-34288980 Glycine max
Glyma.16G182000 0.5kb upstream 0.5kb upstream 500 false Chr16: 34288481-34288980 Glycine max
Glyma.16G182000 0.5kb downstream 0.5kb downstream 4527 true Chr16: 34283954-34288480 Glycine max
Glyma.16G182000 0.5kb downstream 0.5kb downstream 500 false Chr16: 34283954-34284453 Glycine max
Glyma.16G182000 1.0kb upstream 1.0kb upstream 5027 true Chr16: 34284454-34289480 Glycine max
Glyma.16G182000 1.0kb upstream 1.0kb upstream 1000 false Chr16: 34288481-34289480 Glycine max
Glyma.16G182000 1.0kb downstream 1.0kb downstream 5027 true Chr16: 34283454-34288480 Glycine max
Glyma.16G182000 1.0kb downstream 1.0kb downstream 1000 false Chr16: 34283454-34284453 Glycine max
Glyma.16G182000 2.0kb upstream 2.0kb upstream 6027 true Chr16: 34284454-34290480 Glycine max
Glyma.16G182000 2.0kb upstream 2.0kb upstream 2000 false Chr16: 34288481-34290480 Glycine max
Glyma.16G182000 2.0kb downstream 2.0kb downstream 6027 true Chr16: 34282454-34288480 Glycine max
Glyma.16G182000 2.0kb downstream 2.0kb downstream 2000 false Chr16: 34282454-34284453 Glycine max
Glyma.16G182000 5.0kb upstream 5.0kb upstream 9027 true Chr16: 34284454-34293480 Glycine max
Glyma.16G182000 5.0kb upstream 5.0kb upstream 5000 false Chr16: 34288481-34293480 Glycine max
Glyma.16G182000 5.0kb downstream 5.0kb downstream 9027 true Chr16: 34279454-34288480 Glycine max
Glyma.16G182000 5.0kb downstream 5.0kb downstream 5000 false Chr16: 34279454-34284453 Glycine max
Glyma.16G182000 10.0kb upstream 10.0kb upstream 14027 true Chr16: 34284454-34298480 Glycine max
Glyma.16G182000 10.0kb upstream 10.0kb upstream 10000 false Chr16: 34288481-34298480 Glycine max
Glyma.16G182000 10.0kb downstream 10.0kb downstream 14027 true Chr16: 34274454-34288480 Glycine max
Glyma.16G182000 10.0kb downstream 10.0kb downstream 10000 false Chr16: 34274454-34284453 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791816 5273 Angiosperm View MSA
122300160 5265 Fabidae View MSA
124066883 5270 Rosid View MSA
123739634 5271 Pentapetalae View MSA
122794132 5272 Eudicot View MSA
121063105 5274 Embryophyte View MSA
123102888 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.950449 0.0 5.84917   Low
cufflinks 1.17208 0.0 6.89958    
cufflinks 1.41247 0.0 9.95048    
cufflinks 4.91099 0.0 20.3085   High
cufflinks 1.52569 0.0 8.95759    
cufflinks 2.11119 0.0 11.2218    
cufflinks 2.76837 0.0 13.7718    
cufflinks 6.28754 0.0 29.4139   High
cufflinks 1.78902 0.0 9.84465    
cufflinks 0.749       High
cufflinks 0.047     Low Low
cufflinks 0.183        
cufflinks 0.257        
cufflinks 0.257        
cufflinks 0.014     Low Low
cufflinks 0.146        
cufflinks 0.104        
cufflinks 0.517       High
cufflinks 0.256        
cufflinks 0.119        
cufflinks 0.044     Low Low
cufflinks 0.165        
cufflinks 0.238        
cufflinks 0.069        
cufflinks 0.13        
cufflinks 0.105        

0 Strain