Gene : Glyma.16G182300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11203:SF5 - CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 Genomic Order:  1823
Name:  ? Glyma.16G182300 Secondary Identifier:  ? PAC:30560953
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G182300 0.5kb upstream 0.5kb upstream 15984 true Chr16: 34306778-34322761 Glycine max
Glyma.16G182300 0.5kb upstream 0.5kb upstream 500 false Chr16: 34306778-34307277 Glycine max
Glyma.16G182300 0.5kb downstream 0.5kb downstream 15984 true Chr16: 34307278-34323261 Glycine max
Glyma.16G182300 0.5kb downstream 0.5kb downstream 500 false Chr16: 34322762-34323261 Glycine max
Glyma.16G182300 1.0kb upstream 1.0kb upstream 16484 true Chr16: 34306278-34322761 Glycine max
Glyma.16G182300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 34306278-34307277 Glycine max
Glyma.16G182300 1.0kb downstream 1.0kb downstream 16484 true Chr16: 34307278-34323761 Glycine max
Glyma.16G182300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 34322762-34323761 Glycine max
Glyma.16G182300 2.0kb upstream 2.0kb upstream 17484 true Chr16: 34305278-34322761 Glycine max
Glyma.16G182300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 34305278-34307277 Glycine max
Glyma.16G182300 2.0kb downstream 2.0kb downstream 17484 true Chr16: 34307278-34324761 Glycine max
Glyma.16G182300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 34322762-34324761 Glycine max
Glyma.16G182300 5.0kb upstream 5.0kb upstream 20484 true Chr16: 34302278-34322761 Glycine max
Glyma.16G182300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 34302278-34307277 Glycine max
Glyma.16G182300 5.0kb downstream 5.0kb downstream 20484 true Chr16: 34307278-34327761 Glycine max
Glyma.16G182300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 34322762-34327761 Glycine max
Glyma.16G182300 10.0kb upstream 10.0kb upstream 25484 true Chr16: 34297278-34322761 Glycine max
Glyma.16G182300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 34297278-34307277 Glycine max
Glyma.16G182300 10.0kb downstream 10.0kb downstream 25484 true Chr16: 34307278-34332761 Glycine max
Glyma.16G182300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 34322762-34332761 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307431 5265 Fabidae View MSA
124064457 5270 Rosid View MSA
123738421 5271 Pentapetalae View MSA
122791055 5272 Eudicot View MSA
122046415 5273 Angiosperm View MSA
121346167 5274 Embryophyte View MSA
123425250 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.45234 0.0 14.9886    
cufflinks 7.16178 0.0 19.3424    
cufflinks 4.02998 0.0 11.3439   Low
cufflinks 5.05335 0.0 13.9609    
cufflinks 5.19725 0.0 14.3504    
cufflinks 4.06488 0.0 11.4692   Low
cufflinks 10.4115 0.0 27.8051   High
cufflinks 4.41593 0.0 12.3565    
cufflinks 5.94554 0.0 16.2344    
cufflinks 0.646        
cufflinks 0.363       Low
cufflinks 0.893        
cufflinks 0.918        
cufflinks 1.196        
cufflinks 1.348        
cufflinks 1.086        
cufflinks 0.452       Low
cufflinks 0.993        
cufflinks 1.484       High
cufflinks 1.23        
cufflinks 0.418       Low
cufflinks 1.217        
cufflinks 1.38       High
cufflinks 0.387       Low
cufflinks 1.191        
cufflinks 0.542        

0 Strain