Gene : Glyma.16G177400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13343:SF13 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  1774
Name:  ? Glyma.16G177400 Secondary Identifier:  ? PAC:30561868
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G177400 0.5kb upstream 0.5kb upstream 7701 true Chr16: 33857873-33865573 Glycine max
Glyma.16G177400 0.5kb upstream 0.5kb upstream 500 false Chr16: 33857873-33858372 Glycine max
Glyma.16G177400 0.5kb downstream 0.5kb downstream 7701 true Chr16: 33858373-33866073 Glycine max
Glyma.16G177400 0.5kb downstream 0.5kb downstream 500 false Chr16: 33865574-33866073 Glycine max
Glyma.16G177400 1.0kb upstream 1.0kb upstream 8201 true Chr16: 33857373-33865573 Glycine max
Glyma.16G177400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33857373-33858372 Glycine max
Glyma.16G177400 1.0kb downstream 1.0kb downstream 8201 true Chr16: 33858373-33866573 Glycine max
Glyma.16G177400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33865574-33866573 Glycine max
Glyma.16G177400 2.0kb upstream 2.0kb upstream 9201 true Chr16: 33856373-33865573 Glycine max
Glyma.16G177400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33856373-33858372 Glycine max
Glyma.16G177400 2.0kb downstream 2.0kb downstream 9201 true Chr16: 33858373-33867573 Glycine max
Glyma.16G177400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33865574-33867573 Glycine max
Glyma.16G177400 5.0kb upstream 5.0kb upstream 12201 true Chr16: 33853373-33865573 Glycine max
Glyma.16G177400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33853373-33858372 Glycine max
Glyma.16G177400 5.0kb downstream 5.0kb downstream 12201 true Chr16: 33858373-33870573 Glycine max
Glyma.16G177400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33865574-33870573 Glycine max
Glyma.16G177400 10.0kb upstream 10.0kb upstream 17201 true Chr16: 33848373-33865573 Glycine max
Glyma.16G177400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33848373-33858372 Glycine max
Glyma.16G177400 10.0kb downstream 10.0kb downstream 17201 true Chr16: 33858373-33875573 Glycine max
Glyma.16G177400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33865574-33875573 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307064 5265 Fabidae View MSA
124066138 5270 Rosid View MSA
123741710 5271 Pentapetalae View MSA
122789997 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.17004 0.0 31.4304   High
cufflinks 4.116 0.0 13.8279    
cufflinks 4.14242 0.0 21.1769    
cufflinks 3.28588 0.0 18.8794    
cufflinks 1.17231 0.0 4.33863   Low
cufflinks 1.13255 0.0 4.24956   Low
cufflinks 3.60116 0.0 16.0688    
cufflinks 2.26953 0.0 12.6011    
cufflinks 1.19288 0.0 6.23542   Low
cufflinks 0.106        
cufflinks 0.044     Low  
cufflinks 0.206        
cufflinks 0.038     Low  
cufflinks 0.046     Low  
cufflinks 0.033     Low Low
cufflinks 0.342       High
cufflinks 0.028     Low Low
cufflinks 0.202        
cufflinks 0.201        
cufflinks 0.561       High
cufflinks 0.048     Low  
cufflinks 0.465       High
cufflinks 0.353       High
cufflinks 0.064        
cufflinks 0.415       High
cufflinks 0.022     Low Low

0 Strain