Gene : Glyma.16G178100 G. max Wm82.a2.v1
Defline:  (1 of 17) PTHR22814:SF129 - COPPER TRANSPORT FAMILY PROTEIN-RELATED Genomic Order:  1781
Name:  ? Glyma.16G178100 Secondary Identifier:  ? PAC:30560782
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G178100 0.5kb upstream 0.5kb upstream 1523 true Chr16: 33905054-33906576 Glycine max
Glyma.16G178100 0.5kb upstream 0.5kb upstream 500 false Chr16: 33906077-33906576 Glycine max
Glyma.16G178100 0.5kb downstream 0.5kb downstream 1523 true Chr16: 33904554-33906076 Glycine max
Glyma.16G178100 0.5kb downstream 0.5kb downstream 500 false Chr16: 33904554-33905053 Glycine max
Glyma.16G178100 1.0kb upstream 1.0kb upstream 2023 true Chr16: 33905054-33907076 Glycine max
Glyma.16G178100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33906077-33907076 Glycine max
Glyma.16G178100 1.0kb downstream 1.0kb downstream 2023 true Chr16: 33904054-33906076 Glycine max
Glyma.16G178100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33904054-33905053 Glycine max
Glyma.16G178100 2.0kb upstream 2.0kb upstream 3023 true Chr16: 33905054-33908076 Glycine max
Glyma.16G178100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33906077-33908076 Glycine max
Glyma.16G178100 2.0kb downstream 2.0kb downstream 3023 true Chr16: 33903054-33906076 Glycine max
Glyma.16G178100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33903054-33905053 Glycine max
Glyma.16G178100 5.0kb upstream 5.0kb upstream 6023 true Chr16: 33905054-33911076 Glycine max
Glyma.16G178100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33906077-33911076 Glycine max
Glyma.16G178100 5.0kb downstream 5.0kb downstream 6023 true Chr16: 33900054-33906076 Glycine max
Glyma.16G178100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33900054-33905053 Glycine max
Glyma.16G178100 10.0kb upstream 10.0kb upstream 11023 true Chr16: 33905054-33916076 Glycine max
Glyma.16G178100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33906077-33916076 Glycine max
Glyma.16G178100 10.0kb downstream 10.0kb downstream 11023 true Chr16: 33895054-33906076 Glycine max
Glyma.16G178100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33895054-33905053 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298597 5265 Fabidae View MSA
124072200 5270 Rosid View MSA
123751300 5271 Pentapetalae View MSA
122793053 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.31712 0.0 4.87819   High
cufflinks 0.0968893 0.0 0.401781 Low Low
cufflinks 0.778577 0.0 2.94933    
cufflinks 0.96783 0.0 3.63369    
cufflinks 0.11545 0.0 0.474408 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.61331 0.0 2.34823    
cufflinks 0.0991617 0.0 0.410473 Low Low
cufflinks 29.348     High High
cufflinks 2.193        
cufflinks 9.688     High  
cufflinks 3.074        
cufflinks 0.137       Low
cufflinks 0.268       Low
cufflinks 3.253        
cufflinks 33.795     High High
cufflinks 10.898     High High
cufflinks 1.012        
cufflinks 0.474        
cufflinks 1.376        
cufflinks 1.434        
cufflinks 3.643        
cufflinks 0.906        
cufflinks 0.728        
cufflinks 2.521        

0 Strain