Gene : Glyma.16G178000 G. max Wm82.a2.v1
Defline:  (1 of 17) PTHR22814:SF129 - COPPER TRANSPORT FAMILY PROTEIN-RELATED Genomic Order:  1780
Name:  ? Glyma.16G178000 Secondary Identifier:  ? PAC:30559241
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G178000 0.5kb upstream 0.5kb upstream 1654 true Chr16: 33901523-33903176 Glycine max
Glyma.16G178000 0.5kb upstream 0.5kb upstream 500 false Chr16: 33902677-33903176 Glycine max
Glyma.16G178000 0.5kb downstream 0.5kb downstream 1654 true Chr16: 33901023-33902676 Glycine max
Glyma.16G178000 0.5kb downstream 0.5kb downstream 500 false Chr16: 33901023-33901522 Glycine max
Glyma.16G178000 1.0kb upstream 1.0kb upstream 2154 true Chr16: 33901523-33903676 Glycine max
Glyma.16G178000 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33902677-33903676 Glycine max
Glyma.16G178000 1.0kb downstream 1.0kb downstream 2154 true Chr16: 33900523-33902676 Glycine max
Glyma.16G178000 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33900523-33901522 Glycine max
Glyma.16G178000 2.0kb upstream 2.0kb upstream 3154 true Chr16: 33901523-33904676 Glycine max
Glyma.16G178000 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33902677-33904676 Glycine max
Glyma.16G178000 2.0kb downstream 2.0kb downstream 3154 true Chr16: 33899523-33902676 Glycine max
Glyma.16G178000 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33899523-33901522 Glycine max
Glyma.16G178000 5.0kb upstream 5.0kb upstream 6154 true Chr16: 33901523-33907676 Glycine max
Glyma.16G178000 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33902677-33907676 Glycine max
Glyma.16G178000 5.0kb downstream 5.0kb downstream 6154 true Chr16: 33896523-33902676 Glycine max
Glyma.16G178000 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33896523-33901522 Glycine max
Glyma.16G178000 10.0kb upstream 10.0kb upstream 11154 true Chr16: 33901523-33912676 Glycine max
Glyma.16G178000 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33902677-33912676 Glycine max
Glyma.16G178000 10.0kb downstream 10.0kb downstream 11154 true Chr16: 33891523-33902676 Glycine max
Glyma.16G178000 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33891523-33901522 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298597 5265 Fabidae View MSA
124072200 5270 Rosid View MSA
123751300 5271 Pentapetalae View MSA
122793053 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.2626 0.0 134.291 High High
cufflinks 6.44901 0.0 20.203    
cufflinks 13.6981 0.0 38.539    
cufflinks 14.3632 0.0 40.3618    
cufflinks 2.82117 0.0 9.80589    
cufflinks 2.08801 0.0 7.4472    
cufflinks 0.176587 0.0 0.706371 Low Low
cufflinks 8.85848 0.0 26.3474    
cufflinks 1.9531 0.0 6.97098    
cufflinks 317.827     High High
cufflinks 35.839     High  
cufflinks 90.955     High  
cufflinks 34.492     High  
cufflinks 2.408       Low
cufflinks 20.445     High  
cufflinks 70.937     High  
cufflinks 345.244     High High
cufflinks 110.185     High  
cufflinks 29.618     High  
cufflinks 24.34     High  
cufflinks 20.367     High  
cufflinks 35.913     High  
cufflinks 114.877     High  
cufflinks 10.215     High Low
cufflinks 26.93     High  
cufflinks 47.683     High  

0 Strain