Gene : Glyma.16G179100 G. max Wm82.a2.v1
Defline:  (1 of 5) 1.14.13.129 - Beta-carotene 3-hydroxylase / Beta-carotene 3,3'-monooxygenase Genomic Order:  1791
Name:  ? Glyma.16G179100 Secondary Identifier:  ? PAC:30560976
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-5944 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G179100 0.5kb upstream 0.5kb upstream 3216 true Chr16: 33969618-33972833 Glycine max
Glyma.16G179100 0.5kb upstream 0.5kb upstream 500 false Chr16: 33972334-33972833 Glycine max
Glyma.16G179100 0.5kb downstream 0.5kb downstream 3216 true Chr16: 33969118-33972333 Glycine max
Glyma.16G179100 0.5kb downstream 0.5kb downstream 500 false Chr16: 33969118-33969617 Glycine max
Glyma.16G179100 1.0kb upstream 1.0kb upstream 3716 true Chr16: 33969618-33973333 Glycine max
Glyma.16G179100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33972334-33973333 Glycine max
Glyma.16G179100 1.0kb downstream 1.0kb downstream 3716 true Chr16: 33968618-33972333 Glycine max
Glyma.16G179100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33968618-33969617 Glycine max
Glyma.16G179100 2.0kb upstream 2.0kb upstream 4716 true Chr16: 33969618-33974333 Glycine max
Glyma.16G179100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33972334-33974333 Glycine max
Glyma.16G179100 2.0kb downstream 2.0kb downstream 4716 true Chr16: 33967618-33972333 Glycine max
Glyma.16G179100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33967618-33969617 Glycine max
Glyma.16G179100 5.0kb upstream 5.0kb upstream 7716 true Chr16: 33969618-33977333 Glycine max
Glyma.16G179100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33972334-33977333 Glycine max
Glyma.16G179100 5.0kb downstream 5.0kb downstream 7716 true Chr16: 33964618-33972333 Glycine max
Glyma.16G179100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33964618-33969617 Glycine max
Glyma.16G179100 10.0kb upstream 10.0kb upstream 12716 true Chr16: 33969618-33982333 Glycine max
Glyma.16G179100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33972334-33982333 Glycine max
Glyma.16G179100 10.0kb downstream 10.0kb downstream 12716 true Chr16: 33959618-33972333 Glycine max
Glyma.16G179100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33959618-33969617 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310788 5265 Fabidae View MSA
124066838 5270 Rosid View MSA
123749049 5271 Pentapetalae View MSA
122787521 5272 Eudicot View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9309 0.0 53.6916    
cufflinks 7.92988 0.0 23.2416    
cufflinks 30.6074 0.0 81.6602 High High
cufflinks 7.10048 0.0 21.057   Low
cufflinks 22.432 0.0 60.0916 High  
cufflinks 10.6573 0.0 30.0786    
cufflinks 39.2408 0.0 105.133 High High
cufflinks 18.0875 0.0 48.8666    
cufflinks 6.71507 0.0 20.0026   Low
cufflinks 7.591     High High
cufflinks 2.48        
cufflinks 6.338        
cufflinks 4.631        
cufflinks 2.579        
cufflinks 0.684       Low
cufflinks 9.497     High High
cufflinks 2.334        
cufflinks 3.347        
cufflinks 2.074        
cufflinks 3.119        
cufflinks 1.597       Low
cufflinks 5.539        
cufflinks 9.899     High High
cufflinks 2.964        
cufflinks 5.544        
cufflinks 2.619        

0 Strain