Gene : Glyma.16G179200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13696:SF1 - SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED Genomic Order:  1792
Name:  ? Glyma.16G179200 Secondary Identifier:  ? PAC:30561473
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G179200 0.5kb upstream 0.5kb upstream 2227 true Chr16: 33985333-33987559 Glycine max
Glyma.16G179200 0.5kb upstream 0.5kb upstream 500 false Chr16: 33987060-33987559 Glycine max
Glyma.16G179200 0.5kb downstream 0.5kb downstream 2227 true Chr16: 33984833-33987059 Glycine max
Glyma.16G179200 0.5kb downstream 0.5kb downstream 500 false Chr16: 33984833-33985332 Glycine max
Glyma.16G179200 1.0kb upstream 1.0kb upstream 2727 true Chr16: 33985333-33988059 Glycine max
Glyma.16G179200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33987060-33988059 Glycine max
Glyma.16G179200 1.0kb downstream 1.0kb downstream 2727 true Chr16: 33984333-33987059 Glycine max
Glyma.16G179200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33984333-33985332 Glycine max
Glyma.16G179200 2.0kb upstream 2.0kb upstream 3727 true Chr16: 33985333-33989059 Glycine max
Glyma.16G179200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33987060-33989059 Glycine max
Glyma.16G179200 2.0kb downstream 2.0kb downstream 3727 true Chr16: 33983333-33987059 Glycine max
Glyma.16G179200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33983333-33985332 Glycine max
Glyma.16G179200 5.0kb upstream 5.0kb upstream 6727 true Chr16: 33985333-33992059 Glycine max
Glyma.16G179200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33987060-33992059 Glycine max
Glyma.16G179200 5.0kb downstream 5.0kb downstream 6727 true Chr16: 33980333-33987059 Glycine max
Glyma.16G179200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33980333-33985332 Glycine max
Glyma.16G179200 10.0kb upstream 10.0kb upstream 11727 true Chr16: 33985333-33997059 Glycine max
Glyma.16G179200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33987060-33997059 Glycine max
Glyma.16G179200 10.0kb downstream 10.0kb downstream 11727 true Chr16: 33975333-33987059 Glycine max
Glyma.16G179200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33975333-33985332 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309065 5265 Fabidae View MSA
124063209 5270 Rosid View MSA
123737369 5271 Pentapetalae View MSA
122788241 5272 Eudicot View MSA
122045379 5273 Angiosperm View MSA
121344611 5274 Embryophyte View MSA
123425268 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.96239 0.0 9.422    
cufflinks 5.94135 0.0 17.2088   High
cufflinks 1.14129 0.0 4.0723   Low
cufflinks 3.98607 0.0 12.1984    
cufflinks 3.28 0.0 10.2083    
cufflinks 1.29597 0.0 4.54063   Low
cufflinks 4.35106 0.0 13.0613    
cufflinks 5.31444 0.0 15.5922    
cufflinks 3.29543 0.0 10.307    
cufflinks 2.268        
cufflinks 0.122       Low
cufflinks 1.408        
cufflinks 1.054        
cufflinks 0.858        
cufflinks 0.592        
cufflinks 2.755        
cufflinks 0.401        
cufflinks 2.208        
cufflinks 3.095        
cufflinks 2.7        
cufflinks 0.081       Low
cufflinks 2.779        
cufflinks 2.357        
cufflinks 0.057     Low Low
cufflinks 2.334        
cufflinks 0.189       Low

0 Strain