Gene : Glyma.17G002500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11669:SF0 - PROTEIN STICHEL-RELATED Genomic Order:  25
Name:  ? Glyma.17G002500 Secondary Identifier:  ? PAC:30478841
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G002500 0.5kb upstream 0.5kb upstream 13060   true Chr17: 281639-294698 Glycine max
Glyma.17G002500 0.5kb upstream 0.5kb upstream 500   false Chr17: 294199-294698 Glycine max
Glyma.17G002500 0.5kb downstream 0.5kb downstream 13060   true Chr17: 281139-294198 Glycine max
Glyma.17G002500 0.5kb downstream 0.5kb downstream 500   false Chr17: 281139-281638 Glycine max
Glyma.17G002500 1.0kb upstream 1.0kb upstream 13560   true Chr17: 281639-295198 Glycine max
Glyma.17G002500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 294199-295198 Glycine max
Glyma.17G002500 1.0kb downstream 1.0kb downstream 13560   true Chr17: 280639-294198 Glycine max
Glyma.17G002500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 280639-281638 Glycine max
Glyma.17G002500 2.0kb upstream 2.0kb upstream 14560   true Chr17: 281639-296198 Glycine max
Glyma.17G002500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 294199-296198 Glycine max
Glyma.17G002500 2.0kb downstream 2.0kb downstream 14560   true Chr17: 279639-294198 Glycine max
Glyma.17G002500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 279639-281638 Glycine max
Glyma.17G002500 5.0kb upstream 5.0kb upstream 17560   true Chr17: 281639-299198 Glycine max
Glyma.17G002500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 294199-299198 Glycine max
Glyma.17G002500 5.0kb downstream 5.0kb downstream 17560   true Chr17: 276639-294198 Glycine max
Glyma.17G002500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 276639-281638 Glycine max
Glyma.17G002500 10.0kb upstream 10.0kb upstream 22560   true Chr17: 281639-304198 Glycine max
Glyma.17G002500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 294199-304198 Glycine max
Glyma.17G002500 10.0kb downstream 10.0kb downstream 22560   true Chr17: 271639-294198 Glycine max
Glyma.17G002500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 271639-281638 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302612 5265 Fabidae View MSA
124067444 5270 Rosid View MSA
123746240 5271 Pentapetalae View MSA
122793497 5272 Eudicot View MSA
122045502 5273 Angiosperm View MSA
121349902 5274 Embryophyte View MSA
123381492 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.73342 0.0 5.01971    
cufflinks 4.67441 0.0 12.5244    
cufflinks 1.5165 0.0 4.44825   Low
cufflinks 1.29073 0.0 3.88391   Low
cufflinks 5.39485 0.0 14.4105   High
cufflinks 2.3194 0.0 6.49815    
cufflinks 4.62688 0.0 12.4067    
cufflinks 3.45954 0.0 9.385    
cufflinks 3.50346 0.0 9.50271    
cufflinks 2.14        
cufflinks 0.083       Low
cufflinks 1.403        
cufflinks 2.875        
cufflinks 4.15       High
cufflinks 0.211       Low
cufflinks 1.52        
cufflinks 0.523        
cufflinks 2.857        
cufflinks 2.505        
cufflinks 1.191        
cufflinks 0.248       Low
cufflinks 1.508        
cufflinks 1.856        
cufflinks 0.172       Low
cufflinks 1.28        
cufflinks 0.444        

0 Strain