Gene : Glyma.17G004500 G. max Wm82.a2.v1
Defline:  (1 of 77) PF03000 - NPH3 family (NPH3) Genomic Order:  45
Name:  ? Glyma.17G004500 Secondary Identifier:  ? PAC:30482565
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G004500 0.5kb upstream 0.5kb upstream 7028   true Chr17: 444580-451607 Glycine max
Glyma.17G004500 0.5kb upstream 0.5kb upstream 500   false Chr17: 451108-451607 Glycine max
Glyma.17G004500 0.5kb downstream 0.5kb downstream 7028   true Chr17: 444080-451107 Glycine max
Glyma.17G004500 0.5kb downstream 0.5kb downstream 500   false Chr17: 444080-444579 Glycine max
Glyma.17G004500 1.0kb upstream 1.0kb upstream 7528   true Chr17: 444580-452107 Glycine max
Glyma.17G004500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 451108-452107 Glycine max
Glyma.17G004500 1.0kb downstream 1.0kb downstream 7528   true Chr17: 443580-451107 Glycine max
Glyma.17G004500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 443580-444579 Glycine max
Glyma.17G004500 2.0kb upstream 2.0kb upstream 8528   true Chr17: 444580-453107 Glycine max
Glyma.17G004500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 451108-453107 Glycine max
Glyma.17G004500 2.0kb downstream 2.0kb downstream 8528   true Chr17: 442580-451107 Glycine max
Glyma.17G004500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 442580-444579 Glycine max
Glyma.17G004500 5.0kb upstream 5.0kb upstream 11528   true Chr17: 444580-456107 Glycine max
Glyma.17G004500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 451108-456107 Glycine max
Glyma.17G004500 5.0kb downstream 5.0kb downstream 11528   true Chr17: 439580-451107 Glycine max
Glyma.17G004500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 439580-444579 Glycine max
Glyma.17G004500 10.0kb upstream 10.0kb upstream 16528   true Chr17: 444580-461107 Glycine max
Glyma.17G004500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 451108-461107 Glycine max
Glyma.17G004500 10.0kb downstream 10.0kb downstream 16528   true Chr17: 434580-451107 Glycine max
Glyma.17G004500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 434580-444579 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026454 5273 Angiosperm View MSA
122313072 5265 Fabidae View MSA
124067148 5270 Rosid View MSA
123737998 5271 Pentapetalae View MSA
122789015 5272 Eudicot View MSA
121296339 5274 Embryophyte View MSA
123334520 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.712923 0.0 4.76775    
cufflinks 1.38913 0.0 7.71855    
cufflinks 0.768067 0.0 5.04763    
cufflinks 5.88155 0.0 21.0979   High
cufflinks 0.569457 0.0 2.53465    
cufflinks 0.190672 0.0 0.92831 Low Low
cufflinks 0.319786 0.0 2.00507    
cufflinks 7.58733 0.0 26.3827   High
cufflinks 0.870542 0.0 4.56922    
cufflinks 0.933       High
cufflinks 0.192        
cufflinks 0.443        
cufflinks 0.117        
cufflinks 0.038     Low Low
cufflinks 0.023     Low Low
cufflinks 0.351        
cufflinks 0.184        
cufflinks 0.629       High
cufflinks 0.218        
cufflinks 0.262        
cufflinks 0.179        
cufflinks 0.325        
cufflinks 0.27        
cufflinks 0.076        
cufflinks 0.329        
cufflinks 0.086        

0 Strain