Gene : Glyma.17G005500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12663:SF0 - PDS5 Genomic Order:  55
Name:  ? Glyma.17G005500 Secondary Identifier:  ? PAC:30482340
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G005500 0.5kb upstream 0.5kb upstream 21758   true Chr17: 501101-522858 Glycine max
Glyma.17G005500 0.5kb upstream 0.5kb upstream 500   false Chr17: 522359-522858 Glycine max
Glyma.17G005500 0.5kb downstream 0.5kb downstream 21758   true Chr17: 500601-522358 Glycine max
Glyma.17G005500 0.5kb downstream 0.5kb downstream 500   false Chr17: 500601-501100 Glycine max
Glyma.17G005500 1.0kb upstream 1.0kb upstream 22258   true Chr17: 501101-523358 Glycine max
Glyma.17G005500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 522359-523358 Glycine max
Glyma.17G005500 1.0kb downstream 1.0kb downstream 22258   true Chr17: 500101-522358 Glycine max
Glyma.17G005500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 500101-501100 Glycine max
Glyma.17G005500 2.0kb upstream 2.0kb upstream 23258   true Chr17: 501101-524358 Glycine max
Glyma.17G005500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 522359-524358 Glycine max
Glyma.17G005500 2.0kb downstream 2.0kb downstream 23258   true Chr17: 499101-522358 Glycine max
Glyma.17G005500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 499101-501100 Glycine max
Glyma.17G005500 5.0kb upstream 5.0kb upstream 26258   true Chr17: 501101-527358 Glycine max
Glyma.17G005500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 522359-527358 Glycine max
Glyma.17G005500 5.0kb downstream 5.0kb downstream 26258   true Chr17: 496101-522358 Glycine max
Glyma.17G005500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 496101-501100 Glycine max
Glyma.17G005500 10.0kb upstream 10.0kb upstream 31258   true Chr17: 501101-532358 Glycine max
Glyma.17G005500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 522359-532358 Glycine max
Glyma.17G005500 10.0kb downstream 10.0kb downstream 31258   true Chr17: 491101-522358 Glycine max
Glyma.17G005500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 491101-501100 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313957 5265 Fabidae View MSA
124050365 5270 Rosid View MSA
123751291 5271 Pentapetalae View MSA
122791249 5272 Eudicot View MSA
122045093 5273 Angiosperm View MSA
121348998 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.8156 0.0 32.7288   High
cufflinks 7.68372 0.0 20.6952    
cufflinks 11.8916 0.0 33.1518   High
cufflinks 6.99793 0.0 18.7837    
cufflinks 6.46605 0.0 17.2923    
cufflinks 4.75865 0.0 12.6989   Low
cufflinks 7.42828 0.0 19.9362    
cufflinks 5.87196 0.0 15.6862    
cufflinks 8.17779 0.0 22.0816    
cufflinks 2.248       Low
cufflinks 2.541       Low
cufflinks 4.112        
cufflinks 2.676       Low
cufflinks 2.802        
cufflinks 3.721        
cufflinks 4.693       High
cufflinks 2.472       Low
cufflinks 4.305        
cufflinks 3.739        
cufflinks 4.764       High
cufflinks 3.066        
cufflinks 5.01       High
cufflinks 4.386        
cufflinks 3.055        
cufflinks 4.69       High
cufflinks 3.244        

0 Strain