Gene : Glyma.16G219200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13471 - TETRATRICOPEPTIDE-LIKE HELICAL Genomic Order:  2192
Name:  ? Glyma.16G219200 Secondary Identifier:  ? PAC:30562000
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G219200 0.5kb upstream 0.5kb upstream 10296 true Chr16: 37653015-37663310 Glycine max
Glyma.16G219200 0.5kb upstream 0.5kb upstream 500 false Chr16: 37653015-37653514 Glycine max
Glyma.16G219200 0.5kb downstream 0.5kb downstream 10296 true Chr16: 37653515-37663810 Glycine max
Glyma.16G219200 0.5kb downstream 0.5kb downstream 500 false Chr16: 37663311-37663810 Glycine max
Glyma.16G219200 1.0kb upstream 1.0kb upstream 10796 true Chr16: 37652515-37663310 Glycine max
Glyma.16G219200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 37652515-37653514 Glycine max
Glyma.16G219200 1.0kb downstream 1.0kb downstream 10796 true Chr16: 37653515-37664310 Glycine max
Glyma.16G219200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 37663311-37664310 Glycine max
Glyma.16G219200 2.0kb upstream 2.0kb upstream 11796 true Chr16: 37651515-37663310 Glycine max
Glyma.16G219200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 37651515-37653514 Glycine max
Glyma.16G219200 2.0kb downstream 2.0kb downstream 11796 true Chr16: 37653515-37665310 Glycine max
Glyma.16G219200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 37663311-37665310 Glycine max
Glyma.16G219200 5.0kb upstream 5.0kb upstream 14796 true Chr16: 37648515-37663310 Glycine max
Glyma.16G219200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 37648515-37653514 Glycine max
Glyma.16G219200 5.0kb downstream 5.0kb downstream 14796 true Chr16: 37653515-37668310 Glycine max
Glyma.16G219200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 37663311-37668310 Glycine max
Glyma.16G219200 10.0kb upstream 10.0kb upstream 19796 true Chr16: 37643515-37663310 Glycine max
Glyma.16G219200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 37643515-37653514 Glycine max
Glyma.16G219200 10.0kb downstream 10.0kb downstream 19796 true Chr16: 37653515-37673310 Glycine max
Glyma.16G219200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 37663311-37673310 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026294 5273 Angiosperm View MSA
122303651 5265 Fabidae View MSA
124063605 5270 Rosid View MSA
123738966 5271 Pentapetalae View MSA
122791971 5272 Eudicot View MSA
121345312 5274 Embryophyte View MSA
123423930 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.90854 0.0 25.3964   High
cufflinks 5.02636 0.0 20.4063    
cufflinks 6.62945 0.0 31.5687   High
cufflinks 5.10219 0.0 26.7416    
cufflinks 4.77745 0.0 21.6135    
cufflinks 4.08493 0.0 16.9314   Low
cufflinks 5.47793 0.0 23.927    
cufflinks 4.38875 0.0 19.908    
cufflinks 4.81133 0.0 22.5006    
cufflinks 0.495       Low
cufflinks 0.716        
cufflinks 0.835        
cufflinks 0.692        
cufflinks 0.656        
cufflinks 0.721        
cufflinks 0.844        
cufflinks 0.381       Low
cufflinks 0.899        
cufflinks 0.79        
cufflinks 0.903       High
cufflinks 0.69        
cufflinks 0.904       High
cufflinks 0.628        
cufflinks 0.742        
cufflinks 0.911       High
cufflinks 0.628        

0 Strain