Gene : Glyma.16G217600 G. max Wm82.a2.v1
Defline:  (1 of 477) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  2176
Name:  ? Glyma.16G217600 Secondary Identifier:  ? PAC:30559081
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G217600 0.5kb upstream 0.5kb upstream 3741 true Chr16: 37462258-37465998 Glycine max
Glyma.16G217600 0.5kb upstream 0.5kb upstream 500 false Chr16: 37462258-37462757 Glycine max
Glyma.16G217600 0.5kb downstream 0.5kb downstream 3741 true Chr16: 37462758-37466498 Glycine max
Glyma.16G217600 0.5kb downstream 0.5kb downstream 500 false Chr16: 37465999-37466498 Glycine max
Glyma.16G217600 1.0kb upstream 1.0kb upstream 4241 true Chr16: 37461758-37465998 Glycine max
Glyma.16G217600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 37461758-37462757 Glycine max
Glyma.16G217600 1.0kb downstream 1.0kb downstream 4241 true Chr16: 37462758-37466998 Glycine max
Glyma.16G217600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 37465999-37466998 Glycine max
Glyma.16G217600 2.0kb upstream 2.0kb upstream 5241 true Chr16: 37460758-37465998 Glycine max
Glyma.16G217600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 37460758-37462757 Glycine max
Glyma.16G217600 2.0kb downstream 2.0kb downstream 5241 true Chr16: 37462758-37467998 Glycine max
Glyma.16G217600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 37465999-37467998 Glycine max
Glyma.16G217600 5.0kb upstream 5.0kb upstream 8241 true Chr16: 37457758-37465998 Glycine max
Glyma.16G217600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 37457758-37462757 Glycine max
Glyma.16G217600 5.0kb downstream 5.0kb downstream 8241 true Chr16: 37462758-37470998 Glycine max
Glyma.16G217600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 37465999-37470998 Glycine max
Glyma.16G217600 10.0kb upstream 10.0kb upstream 13241 true Chr16: 37452758-37465998 Glycine max
Glyma.16G217600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 37452758-37462757 Glycine max
Glyma.16G217600 10.0kb downstream 10.0kb downstream 13241 true Chr16: 37462758-37475998 Glycine max
Glyma.16G217600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 37465999-37475998 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312685 5265 Fabidae View MSA
124063530 5270 Rosid View MSA
123753292 5271 Pentapetalae View MSA
122796166 5272 Eudicot View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0289 0.0 31.7372    
cufflinks 14.6647 0.0 40.7846   High
cufflinks 26.1015 0.0 70.0111 High High
cufflinks 6.57113 0.0 20.2093    
cufflinks 4.10611 0.0 13.5385    
cufflinks 5.60973 0.0 17.669    
cufflinks 7.57529 0.0 22.9251    
cufflinks 3.42871 0.0 11.4964   Low
cufflinks 5.63786 0.0 17.6883    
cufflinks 0.554       Low
cufflinks 4.195        
cufflinks 4.524        
cufflinks 1.069        
cufflinks 1.526        
cufflinks 12.977     High High
cufflinks 3.38        
cufflinks 0.193       Low
cufflinks 2.263        
cufflinks 3.187        
cufflinks 3.198        
cufflinks 1.39        
cufflinks 2.923        
cufflinks 4.512        
cufflinks 2.699        
cufflinks 3.359        
cufflinks 0.436       Low

0 Strain