Gene : Glyma.17G026200 G. max Wm82.a2.v1
Defline:  (1 of 6) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  262
Name:  ? Glyma.17G026200 Secondary Identifier:  ? PAC:30480016
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G026200 0.5kb upstream 0.5kb upstream 3695   true Chr17: 1928562-1932256 Glycine max
Glyma.17G026200 0.5kb upstream 0.5kb upstream 500   false Chr17: 1931757-1932256 Glycine max
Glyma.17G026200 0.5kb downstream 0.5kb downstream 3695   true Chr17: 1928062-1931756 Glycine max
Glyma.17G026200 0.5kb downstream 0.5kb downstream 500   false Chr17: 1928062-1928561 Glycine max
Glyma.17G026200 1.0kb upstream 1.0kb upstream 4195   true Chr17: 1928562-1932756 Glycine max
Glyma.17G026200 1.0kb upstream 1.0kb upstream 1000   false Chr17: 1931757-1932756 Glycine max
Glyma.17G026200 1.0kb downstream 1.0kb downstream 4195   true Chr17: 1927562-1931756 Glycine max
Glyma.17G026200 1.0kb downstream 1.0kb downstream 1000   false Chr17: 1927562-1928561 Glycine max
Glyma.17G026200 2.0kb upstream 2.0kb upstream 5195   true Chr17: 1928562-1933756 Glycine max
Glyma.17G026200 2.0kb upstream 2.0kb upstream 2000   false Chr17: 1931757-1933756 Glycine max
Glyma.17G026200 2.0kb downstream 2.0kb downstream 5195   true Chr17: 1926562-1931756 Glycine max
Glyma.17G026200 2.0kb downstream 2.0kb downstream 2000   false Chr17: 1926562-1928561 Glycine max
Glyma.17G026200 5.0kb upstream 5.0kb upstream 8195   true Chr17: 1928562-1936756 Glycine max
Glyma.17G026200 5.0kb upstream 5.0kb upstream 5000   false Chr17: 1931757-1936756 Glycine max
Glyma.17G026200 5.0kb downstream 5.0kb downstream 8195   true Chr17: 1923562-1931756 Glycine max
Glyma.17G026200 5.0kb downstream 5.0kb downstream 5000   false Chr17: 1923562-1928561 Glycine max
Glyma.17G026200 10.0kb upstream 10.0kb upstream 13195   true Chr17: 1928562-1941756 Glycine max
Glyma.17G026200 10.0kb upstream 10.0kb upstream 10000   false Chr17: 1931757-1941756 Glycine max
Glyma.17G026200 10.0kb downstream 10.0kb downstream 13195   true Chr17: 1918562-1931756 Glycine max
Glyma.17G026200 10.0kb downstream 10.0kb downstream 10000   false Chr17: 1918562-1928561 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122303941 5265 Fabidae View MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.378763 0.0 1.46075    
cufflinks 0.0227368 0.0 0.103112 Low Low
cufflinks 1.89926 0.0 6.70197   High
cufflinks 0.075763 0.0 0.312007 Low  
cufflinks 0.0406133 0.0 0.175365 Low  
cufflinks 0.260013 0.0 1.01768 Low  
cufflinks 0.0631282 0.0 0.263597 Low  
cufflinks 0.093154 0.0 0.379643 Low  
cufflinks 0.14127 0.0 0.565572 Low  
cufflinks 0.095     Low  
cufflinks 0.391        
cufflinks 2.383       High
cufflinks 0.05     Low  
cufflinks 0.023     Low Low
cufflinks 0.576        
cufflinks 0.019     Low Low
cufflinks 0.509        
cufflinks 1.238       High
cufflinks 0.203        
cufflinks 0.05     Low  
cufflinks 0.299        
cufflinks 0.081     Low  
cufflinks 0.173        
cufflinks 0.576        
cufflinks 0.016     Low Low
cufflinks 0.322        

0 Strain