Gene : Glyma.17G026600 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  266
Name:  ? Glyma.17G026600 Secondary Identifier:  ? PAC:30479749
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G026600 0.5kb upstream 0.5kb upstream 11882   true Chr17: 1959885-1971766 Glycine max
Glyma.17G026600 0.5kb upstream 0.5kb upstream 500   false Chr17: 1971267-1971766 Glycine max
Glyma.17G026600 0.5kb downstream 0.5kb downstream 11882   true Chr17: 1959385-1971266 Glycine max
Glyma.17G026600 0.5kb downstream 0.5kb downstream 500   false Chr17: 1959385-1959884 Glycine max
Glyma.17G026600 1.0kb upstream 1.0kb upstream 12382   true Chr17: 1959885-1972266 Glycine max
Glyma.17G026600 1.0kb upstream 1.0kb upstream 1000   false Chr17: 1971267-1972266 Glycine max
Glyma.17G026600 1.0kb downstream 1.0kb downstream 12382   true Chr17: 1958885-1971266 Glycine max
Glyma.17G026600 1.0kb downstream 1.0kb downstream 1000   false Chr17: 1958885-1959884 Glycine max
Glyma.17G026600 2.0kb upstream 2.0kb upstream 13382   true Chr17: 1959885-1973266 Glycine max
Glyma.17G026600 2.0kb upstream 2.0kb upstream 2000   false Chr17: 1971267-1973266 Glycine max
Glyma.17G026600 2.0kb downstream 2.0kb downstream 13382   true Chr17: 1957885-1971266 Glycine max
Glyma.17G026600 2.0kb downstream 2.0kb downstream 2000   false Chr17: 1957885-1959884 Glycine max
Glyma.17G026600 5.0kb upstream 5.0kb upstream 16382   true Chr17: 1959885-1976266 Glycine max
Glyma.17G026600 5.0kb upstream 5.0kb upstream 5000   false Chr17: 1971267-1976266 Glycine max
Glyma.17G026600 5.0kb downstream 5.0kb downstream 16382   true Chr17: 1954885-1971266 Glycine max
Glyma.17G026600 5.0kb downstream 5.0kb downstream 5000   false Chr17: 1954885-1959884 Glycine max
Glyma.17G026600 10.0kb upstream 10.0kb upstream 21382   true Chr17: 1959885-1981266 Glycine max
Glyma.17G026600 10.0kb upstream 10.0kb upstream 10000   false Chr17: 1971267-1981266 Glycine max
Glyma.17G026600 10.0kb downstream 10.0kb downstream 21382   true Chr17: 1949885-1971266 Glycine max
Glyma.17G026600 10.0kb downstream 10.0kb downstream 10000   false Chr17: 1949885-1959884 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308695 5265 Fabidae View MSA
124064635 5270 Rosid View MSA
123740769 5271 Pentapetalae View MSA
122790755 5272 Eudicot View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.7425 0.0 63.9229   High
cufflinks 11.2449 0.0 33.8568    
cufflinks 7.73278 0.0 22.9469    
cufflinks 6.79666 0.0 25.003    
cufflinks 8.26335 0.0 24.5206    
cufflinks 5.07317 0.0 15.5357   Low
cufflinks 9.32662 0.0 33.3695    
cufflinks 6.31933 0.0 24.7729    
cufflinks 6.39432 0.0 19.2282    
cufflinks 1.499        
cufflinks 0.559       Low
cufflinks 2.031        
cufflinks 1.666        
cufflinks 1.757        
cufflinks 0.632       Low
cufflinks 5.669       High
cufflinks 0.723       Low
cufflinks 2.355        
cufflinks 2.88        
cufflinks 5.636       High
cufflinks 0.698       Low
cufflinks 5.585       High
cufflinks 4.44       High
cufflinks 0.826        
cufflinks 5.81       High
cufflinks 0.863        

0 Strain