Gene : Glyma.17G027100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12606//PTHR12606:SF23 - SENTRIN/SUMO-SPECIFIC PROTEASE Genomic Order:  271
Name:  ? Glyma.17G027100 Secondary Identifier:  ? PAC:30480847
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G027100 0.5kb upstream 0.5kb upstream 6381   true Chr17: 1993410-1999790 Glycine max
Glyma.17G027100 0.5kb upstream 0.5kb upstream 500   false Chr17: 1993410-1993909 Glycine max
Glyma.17G027100 0.5kb downstream 0.5kb downstream 6381   true Chr17: 1993910-2000290 Glycine max
Glyma.17G027100 0.5kb downstream 0.5kb downstream 500   false Chr17: 1999791-2000290 Glycine max
Glyma.17G027100 1.0kb upstream 1.0kb upstream 6881   true Chr17: 1992910-1999790 Glycine max
Glyma.17G027100 1.0kb upstream 1.0kb upstream 1000   false Chr17: 1992910-1993909 Glycine max
Glyma.17G027100 1.0kb downstream 1.0kb downstream 6881   true Chr17: 1993910-2000790 Glycine max
Glyma.17G027100 1.0kb downstream 1.0kb downstream 1000   false Chr17: 1999791-2000790 Glycine max
Glyma.17G027100 2.0kb upstream 2.0kb upstream 7881   true Chr17: 1991910-1999790 Glycine max
Glyma.17G027100 2.0kb upstream 2.0kb upstream 2000   false Chr17: 1991910-1993909 Glycine max
Glyma.17G027100 2.0kb downstream 2.0kb downstream 7881   true Chr17: 1993910-2001790 Glycine max
Glyma.17G027100 2.0kb downstream 2.0kb downstream 2000   false Chr17: 1999791-2001790 Glycine max
Glyma.17G027100 5.0kb upstream 5.0kb upstream 10881   true Chr17: 1988910-1999790 Glycine max
Glyma.17G027100 5.0kb upstream 5.0kb upstream 5000   false Chr17: 1988910-1993909 Glycine max
Glyma.17G027100 5.0kb downstream 5.0kb downstream 10881   true Chr17: 1993910-2004790 Glycine max
Glyma.17G027100 5.0kb downstream 5.0kb downstream 5000   false Chr17: 1999791-2004790 Glycine max
Glyma.17G027100 10.0kb upstream 10.0kb upstream 15881   true Chr17: 1983910-1999790 Glycine max
Glyma.17G027100 10.0kb upstream 10.0kb upstream 10000   false Chr17: 1983910-1993909 Glycine max
Glyma.17G027100 10.0kb downstream 10.0kb downstream 15881   true Chr17: 1993910-2009790 Glycine max
Glyma.17G027100 10.0kb downstream 10.0kb downstream 10000   false Chr17: 1999791-2009790 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311892 5265 Fabidae View MSA
124062657 5270 Rosid View MSA
123737823 5271 Pentapetalae View MSA
122797734 5272 Eudicot View MSA
122046617 5273 Angiosperm View MSA
121348677 5274 Embryophyte View MSA
123380965 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.07695 0.0 42.0606   High
cufflinks 6.77343 0.0 21.3288    
cufflinks 6.36547 0.0 31.4812    
cufflinks 6.57001 0.0 25.0712    
cufflinks 5.60321 0.0 28.6049   Low
cufflinks 5.55438 0.0 24.8891   Low
cufflinks 6.26181 0.0 31.0306    
cufflinks 6.31957 0.0 27.4884    
cufflinks 6.40294 0.0 30.8167    
cufflinks 1.333       Low
cufflinks 1.211       Low
cufflinks 1.841        
cufflinks 1.485        
cufflinks 1.586        
cufflinks 1.286       Low
cufflinks 1.957        
cufflinks 1.239       Low
cufflinks 1.811        
cufflinks 1.944        
cufflinks 1.988        
cufflinks 1.467        
cufflinks 2.001       High
cufflinks 2.284       High
cufflinks 1.72        
cufflinks 1.906        
cufflinks 1.313       Low

0 Strain