Gene : Glyma.17G028900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  289
Name:  ? Glyma.17G028900 Secondary Identifier:  ? PAC:30481120
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G028900 0.5kb upstream 0.5kb upstream 4537   true Chr17: 2139649-2144185 Glycine max
Glyma.17G028900 0.5kb upstream 0.5kb upstream 500   false Chr17: 2139649-2140148 Glycine max
Glyma.17G028900 0.5kb downstream 0.5kb downstream 4537   true Chr17: 2140149-2144685 Glycine max
Glyma.17G028900 0.5kb downstream 0.5kb downstream 500   false Chr17: 2144186-2144685 Glycine max
Glyma.17G028900 1.0kb upstream 1.0kb upstream 5037   true Chr17: 2139149-2144185 Glycine max
Glyma.17G028900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 2139149-2140148 Glycine max
Glyma.17G028900 1.0kb downstream 1.0kb downstream 5037   true Chr17: 2140149-2145185 Glycine max
Glyma.17G028900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 2144186-2145185 Glycine max
Glyma.17G028900 2.0kb upstream 2.0kb upstream 6037   true Chr17: 2138149-2144185 Glycine max
Glyma.17G028900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 2138149-2140148 Glycine max
Glyma.17G028900 2.0kb downstream 2.0kb downstream 6037   true Chr17: 2140149-2146185 Glycine max
Glyma.17G028900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 2144186-2146185 Glycine max
Glyma.17G028900 5.0kb upstream 5.0kb upstream 9037   true Chr17: 2135149-2144185 Glycine max
Glyma.17G028900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 2135149-2140148 Glycine max
Glyma.17G028900 5.0kb downstream 5.0kb downstream 9037   true Chr17: 2140149-2149185 Glycine max
Glyma.17G028900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 2144186-2149185 Glycine max
Glyma.17G028900 10.0kb upstream 10.0kb upstream 14037   true Chr17: 2130149-2144185 Glycine max
Glyma.17G028900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 2130149-2140148 Glycine max
Glyma.17G028900 10.0kb downstream 10.0kb downstream 14037   true Chr17: 2140149-2154185 Glycine max
Glyma.17G028900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 2144186-2154185 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
122303253 5265 Fabidae View MSA
124069433 5270 Rosid View MSA
123746924 5271 Pentapetalae View MSA
122794448 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.90122 0.0 21.677    
cufflinks 6.04719 0.0 17.0284    
cufflinks 6.88552 0.0 19.1263    
cufflinks 8.51278 0.0 23.2392    
cufflinks 12.6118 0.0 33.7636   High
cufflinks 8.80061 0.0 23.9498    
cufflinks 5.46927 0.0 15.4856   Low
cufflinks 14.9232 0.0 39.8394   High
cufflinks 5.78776 0.0 16.3248    
cufflinks 6.297       High
cufflinks 2.781        
cufflinks 2.296        
cufflinks 4.904        
cufflinks 6.518       High
cufflinks 1.054       Low
cufflinks 2.814        
cufflinks 6.079     High High
cufflinks 2.911        
cufflinks 3.484        
cufflinks 2.249        
cufflinks 2.7        
cufflinks 2.501        
cufflinks 2.593        
cufflinks 3.539        
cufflinks 2.235        
cufflinks 4.158        

0 Strain