Gene : Glyma.17G016400 G. max Wm82.a2.v1
Defline:  (1 of 57) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  164
Name:  ? Glyma.17G016400 Secondary Identifier:  ? PAC:30478971
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G016400 0.5kb upstream 0.5kb upstream 2440   true Chr17: 1221432-1223871 Glycine max
Glyma.17G016400 0.5kb upstream 0.5kb upstream 500   false Chr17: 1221432-1221931 Glycine max
Glyma.17G016400 0.5kb downstream 0.5kb downstream 2440   true Chr17: 1221932-1224371 Glycine max
Glyma.17G016400 0.5kb downstream 0.5kb downstream 500   false Chr17: 1223872-1224371 Glycine max
Glyma.17G016400 1.0kb upstream 1.0kb upstream 2940   true Chr17: 1220932-1223871 Glycine max
Glyma.17G016400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 1220932-1221931 Glycine max
Glyma.17G016400 1.0kb downstream 1.0kb downstream 2940   true Chr17: 1221932-1224871 Glycine max
Glyma.17G016400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 1223872-1224871 Glycine max
Glyma.17G016400 2.0kb upstream 2.0kb upstream 3940   true Chr17: 1219932-1223871 Glycine max
Glyma.17G016400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 1219932-1221931 Glycine max
Glyma.17G016400 2.0kb downstream 2.0kb downstream 3940   true Chr17: 1221932-1225871 Glycine max
Glyma.17G016400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 1223872-1225871 Glycine max
Glyma.17G016400 5.0kb upstream 5.0kb upstream 6940   true Chr17: 1216932-1223871 Glycine max
Glyma.17G016400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 1216932-1221931 Glycine max
Glyma.17G016400 5.0kb downstream 5.0kb downstream 6940   true Chr17: 1221932-1228871 Glycine max
Glyma.17G016400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 1223872-1228871 Glycine max
Glyma.17G016400 10.0kb upstream 10.0kb upstream 11940   true Chr17: 1211932-1223871 Glycine max
Glyma.17G016400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 1211932-1221931 Glycine max
Glyma.17G016400 10.0kb downstream 10.0kb downstream 11940   true Chr17: 1221932-1233871 Glycine max
Glyma.17G016400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 1223872-1233871 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306783 5265 Fabidae View MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.402292 0.0 1.51867    
cufflinks 0.450686 0.0 1.69065   High
cufflinks 0.360707 0.0 1.36508    
cufflinks 0.317295 0.0 1.20957    
cufflinks 0.123959 0.0 0.491159 Low Low
cufflinks 0.146137 0.0 0.575244 Low Low
cufflinks 0.279003 0.0 1.07004    
cufflinks 0.213079 0.0 0.826438 Low  
cufflinks 0.305186 0.0 1.16484    
cufflinks 0.044     Low Low
cufflinks 0.098       Low
cufflinks 0.485       High
cufflinks 0.349        
cufflinks 0.386        
cufflinks 0.059       Low
cufflinks 0.27        
cufflinks 0.148        
cufflinks 0.369        
cufflinks 0.412        
cufflinks 0.302        
cufflinks 0.094       Low
cufflinks 0.38        
cufflinks 0.286        
cufflinks 0.208        
cufflinks 0.296        
cufflinks 0.188        

0 Strain