Gene : Glyma.17G021800 G. max Wm82.a2.v1
Defline:  (1 of 13) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  218
Name:  ? Glyma.17G021800 Secondary Identifier:  ? PAC:30481396
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G021800 0.5kb upstream 0.5kb upstream 4500   true Chr17: 1590662-1595161 Glycine max
Glyma.17G021800 0.5kb upstream 0.5kb upstream 500   false Chr17: 1590662-1591161 Glycine max
Glyma.17G021800 0.5kb downstream 0.5kb downstream 4500   true Chr17: 1591162-1595661 Glycine max
Glyma.17G021800 0.5kb downstream 0.5kb downstream 500   false Chr17: 1595162-1595661 Glycine max
Glyma.17G021800 1.0kb upstream 1.0kb upstream 5000   true Chr17: 1590162-1595161 Glycine max
Glyma.17G021800 1.0kb upstream 1.0kb upstream 1000   false Chr17: 1590162-1591161 Glycine max
Glyma.17G021800 1.0kb downstream 1.0kb downstream 5000   true Chr17: 1591162-1596161 Glycine max
Glyma.17G021800 1.0kb downstream 1.0kb downstream 1000   false Chr17: 1595162-1596161 Glycine max
Glyma.17G021800 2.0kb upstream 2.0kb upstream 6000   true Chr17: 1589162-1595161 Glycine max
Glyma.17G021800 2.0kb upstream 2.0kb upstream 2000   false Chr17: 1589162-1591161 Glycine max
Glyma.17G021800 2.0kb downstream 2.0kb downstream 6000   true Chr17: 1591162-1597161 Glycine max
Glyma.17G021800 2.0kb downstream 2.0kb downstream 2000   false Chr17: 1595162-1597161 Glycine max
Glyma.17G021800 5.0kb upstream 5.0kb upstream 9000   true Chr17: 1586162-1595161 Glycine max
Glyma.17G021800 5.0kb upstream 5.0kb upstream 5000   false Chr17: 1586162-1591161 Glycine max
Glyma.17G021800 5.0kb downstream 5.0kb downstream 9000   true Chr17: 1591162-1600161 Glycine max
Glyma.17G021800 5.0kb downstream 5.0kb downstream 5000   false Chr17: 1595162-1600161 Glycine max
Glyma.17G021800 10.0kb upstream 10.0kb upstream 14000   true Chr17: 1581162-1595161 Glycine max
Glyma.17G021800 10.0kb upstream 10.0kb upstream 10000   false Chr17: 1581162-1591161 Glycine max
Glyma.17G021800 10.0kb downstream 10.0kb downstream 14000   true Chr17: 1591162-1605161 Glycine max
Glyma.17G021800 10.0kb downstream 10.0kb downstream 10000   false Chr17: 1595162-1605161 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310498 5265 Fabidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.3942 0.0 51.2812    
cufflinks 20.53 0.0 81.4604 High  
cufflinks 38.7056 0.0 179.885 High High
cufflinks 16.7561 0.0 66.7949    
cufflinks 19.6865 0.0 77.5045    
cufflinks 10.9145 0.0 41.2907   Low
cufflinks 21.9029 0.0 88.1412 High  
cufflinks 14.2775 0.0 55.0044    
cufflinks 9.8411 0.0 34.0839   Low
cufflinks 8.618     High  
cufflinks 2.127       Low
cufflinks 13.704     High  
cufflinks 4.359        
cufflinks 2.074       Low
cufflinks 1.825       Low
cufflinks 26.063     High High
cufflinks 2.79        
cufflinks 6.121        
cufflinks 10.06     High  
cufflinks 23.924     High High
cufflinks 2.381        
cufflinks 23.673     High High
cufflinks 16.623     High  
cufflinks 1.963       Low
cufflinks 25.271     High High
cufflinks 2.763        

0 Strain