Gene : Glyma.17G006500 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  65
Name:  ? Glyma.17G006500 Secondary Identifier:  ? PAC:30479934
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G006500 0.5kb upstream 0.5kb upstream 3200   true Chr17: 593868-597067 Glycine max
Glyma.17G006500 0.5kb upstream 0.5kb upstream 500   false Chr17: 593868-594367 Glycine max
Glyma.17G006500 0.5kb downstream 0.5kb downstream 3200   true Chr17: 594368-597567 Glycine max
Glyma.17G006500 0.5kb downstream 0.5kb downstream 500   false Chr17: 597068-597567 Glycine max
Glyma.17G006500 1.0kb upstream 1.0kb upstream 3700   true Chr17: 593368-597067 Glycine max
Glyma.17G006500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 593368-594367 Glycine max
Glyma.17G006500 1.0kb downstream 1.0kb downstream 3700   true Chr17: 594368-598067 Glycine max
Glyma.17G006500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 597068-598067 Glycine max
Glyma.17G006500 2.0kb upstream 2.0kb upstream 4700   true Chr17: 592368-597067 Glycine max
Glyma.17G006500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 592368-594367 Glycine max
Glyma.17G006500 2.0kb downstream 2.0kb downstream 4700   true Chr17: 594368-599067 Glycine max
Glyma.17G006500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 597068-599067 Glycine max
Glyma.17G006500 5.0kb upstream 5.0kb upstream 7700   true Chr17: 589368-597067 Glycine max
Glyma.17G006500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 589368-594367 Glycine max
Glyma.17G006500 5.0kb downstream 5.0kb downstream 7700   true Chr17: 594368-602067 Glycine max
Glyma.17G006500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 597068-602067 Glycine max
Glyma.17G006500 10.0kb upstream 10.0kb upstream 12700   true Chr17: 584368-597067 Glycine max
Glyma.17G006500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 584368-594367 Glycine max
Glyma.17G006500 10.0kb downstream 10.0kb downstream 12700   true Chr17: 594368-607067 Glycine max
Glyma.17G006500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 597068-607067 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307922 5265 Fabidae View MSA
124064149 5270 Rosid View MSA
123753301 5271 Pentapetalae View MSA
122789942 5272 Eudicot View MSA
122043539 5273 Angiosperm View MSA
121344903 5274 Embryophyte View MSA
123380125 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.32508 0.0 32.4204   High
cufflinks 7.2702 0.0 25.711    
cufflinks 4.52238 0.0 17.1413    
cufflinks 3.50073 0.0 14.4204    
cufflinks 4.15014 0.0 16.2598    
cufflinks 2.24628 0.0 8.98843   Low
cufflinks 6.44906 0.0 23.1447    
cufflinks 5.49606 0.0 20.205    
cufflinks 3.52226 0.0 14.3313    
cufflinks 2.505        
cufflinks 0.242       Low
cufflinks 4.058        
cufflinks 1.535        
cufflinks 1.804        
cufflinks 0.28       Low
cufflinks 3.562        
cufflinks 0.823        
cufflinks 3.584        
cufflinks 4.81        
cufflinks 3.902        
cufflinks 0.283       Low
cufflinks 4.16        
cufflinks 5.722       High
cufflinks 0.514        
cufflinks 3.949        
cufflinks 0.253       Low

0 Strain