Gene : Glyma.17G007600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Genomic Order:  76
Name:  ? Glyma.17G007600 Secondary Identifier:  ? PAC:30478595
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G007600 0.5kb upstream 0.5kb upstream 4090   true Chr17: 646258-650347 Glycine max
Glyma.17G007600 0.5kb upstream 0.5kb upstream 500   false Chr17: 646258-646757 Glycine max
Glyma.17G007600 0.5kb downstream 0.5kb downstream 4090   true Chr17: 646758-650847 Glycine max
Glyma.17G007600 0.5kb downstream 0.5kb downstream 500   false Chr17: 650348-650847 Glycine max
Glyma.17G007600 1.0kb upstream 1.0kb upstream 4590   true Chr17: 645758-650347 Glycine max
Glyma.17G007600 1.0kb upstream 1.0kb upstream 1000   false Chr17: 645758-646757 Glycine max
Glyma.17G007600 1.0kb downstream 1.0kb downstream 4590   true Chr17: 646758-651347 Glycine max
Glyma.17G007600 1.0kb downstream 1.0kb downstream 1000   false Chr17: 650348-651347 Glycine max
Glyma.17G007600 2.0kb upstream 2.0kb upstream 5590   true Chr17: 644758-650347 Glycine max
Glyma.17G007600 2.0kb upstream 2.0kb upstream 2000   false Chr17: 644758-646757 Glycine max
Glyma.17G007600 2.0kb downstream 2.0kb downstream 5590   true Chr17: 646758-652347 Glycine max
Glyma.17G007600 2.0kb downstream 2.0kb downstream 2000   false Chr17: 650348-652347 Glycine max
Glyma.17G007600 5.0kb upstream 5.0kb upstream 8590   true Chr17: 641758-650347 Glycine max
Glyma.17G007600 5.0kb upstream 5.0kb upstream 5000   false Chr17: 641758-646757 Glycine max
Glyma.17G007600 5.0kb downstream 5.0kb downstream 8590   true Chr17: 646758-655347 Glycine max
Glyma.17G007600 5.0kb downstream 5.0kb downstream 5000   false Chr17: 650348-655347 Glycine max
Glyma.17G007600 10.0kb upstream 10.0kb upstream 13590   true Chr17: 636758-650347 Glycine max
Glyma.17G007600 10.0kb upstream 10.0kb upstream 10000   false Chr17: 636758-646757 Glycine max
Glyma.17G007600 10.0kb downstream 10.0kb downstream 13590   true Chr17: 646758-660347 Glycine max
Glyma.17G007600 10.0kb downstream 10.0kb downstream 10000   false Chr17: 650348-660347 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310892 5265 Fabidae View MSA
124063713 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.48643 0.0 9.74182    
cufflinks 1.85758 0.0 8.00786    
cufflinks 1.07361 0.0 5.59674    
cufflinks 1.87878 0.0 8.18855    
cufflinks 2.62269 0.0 10.1261   High
cufflinks 2.88249 0.0 10.7908   High
cufflinks 0.665151 0.0 3.74548   Low
cufflinks 1.16895 0.0 4.40502    
cufflinks 1.22748 0.0 6.00709    
cufflinks 24.962     High High
cufflinks 2.039        
cufflinks 2.785        
cufflinks 2.027        
cufflinks 1.239       Low
cufflinks 2.449        
cufflinks 2.448        
cufflinks 13.696     High High
cufflinks 5.125        
cufflinks 1.927        
cufflinks 1.832        
cufflinks 1.345        
cufflinks 1.666        
cufflinks 6.01        
cufflinks 1.313        
cufflinks 1.956        
cufflinks 4.588        

0 Strain