Gene : Glyma.17G009600 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  96
Name:  ? Glyma.17G009600 Secondary Identifier:  ? PAC:30479585
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G009600 0.5kb upstream 0.5kb upstream 1333   true Chr17: 772303-773635 Glycine max
Glyma.17G009600 0.5kb upstream 0.5kb upstream 500   false Chr17: 773136-773635 Glycine max
Glyma.17G009600 0.5kb downstream 0.5kb downstream 1333   true Chr17: 771803-773135 Glycine max
Glyma.17G009600 0.5kb downstream 0.5kb downstream 500   false Chr17: 771803-772302 Glycine max
Glyma.17G009600 1.0kb upstream 1.0kb upstream 1833   true Chr17: 772303-774135 Glycine max
Glyma.17G009600 1.0kb upstream 1.0kb upstream 1000   false Chr17: 773136-774135 Glycine max
Glyma.17G009600 1.0kb downstream 1.0kb downstream 1833   true Chr17: 771303-773135 Glycine max
Glyma.17G009600 1.0kb downstream 1.0kb downstream 1000   false Chr17: 771303-772302 Glycine max
Glyma.17G009600 2.0kb upstream 2.0kb upstream 2833   true Chr17: 772303-775135 Glycine max
Glyma.17G009600 2.0kb upstream 2.0kb upstream 2000   false Chr17: 773136-775135 Glycine max
Glyma.17G009600 2.0kb downstream 2.0kb downstream 2833   true Chr17: 770303-773135 Glycine max
Glyma.17G009600 2.0kb downstream 2.0kb downstream 2000   false Chr17: 770303-772302 Glycine max
Glyma.17G009600 5.0kb upstream 5.0kb upstream 5833   true Chr17: 772303-778135 Glycine max
Glyma.17G009600 5.0kb upstream 5.0kb upstream 5000   false Chr17: 773136-778135 Glycine max
Glyma.17G009600 5.0kb downstream 5.0kb downstream 5833   true Chr17: 767303-773135 Glycine max
Glyma.17G009600 5.0kb downstream 5.0kb downstream 5000   false Chr17: 767303-772302 Glycine max
Glyma.17G009600 10.0kb upstream 10.0kb upstream 10833   true Chr17: 772303-783135 Glycine max
Glyma.17G009600 10.0kb upstream 10.0kb upstream 10000   false Chr17: 773136-783135 Glycine max
Glyma.17G009600 10.0kb downstream 10.0kb downstream 10833   true Chr17: 762303-773135 Glycine max
Glyma.17G009600 10.0kb downstream 10.0kb downstream 10000   false Chr17: 762303-772302 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309341 5265 Fabidae View MSA
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0425076 0.0 0.192773 Low  
cufflinks 0.0262783 0.0 0.124329 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.035     Low High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain