Gene : Glyma.17G053900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22942:SF1 - MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG Genomic Order:  539
Name:  ? Glyma.17G053900 Secondary Identifier:  ? PAC:30480046
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G053900 0.5kb upstream 0.5kb upstream 6893   true Chr17: 4097965-4104857 Glycine max
Glyma.17G053900 0.5kb upstream 0.5kb upstream 500   false Chr17: 4097965-4098464 Glycine max
Glyma.17G053900 0.5kb downstream 0.5kb downstream 6893   true Chr17: 4098465-4105357 Glycine max
Glyma.17G053900 0.5kb downstream 0.5kb downstream 500   false Chr17: 4104858-4105357 Glycine max
Glyma.17G053900 1.0kb upstream 1.0kb upstream 7393   true Chr17: 4097465-4104857 Glycine max
Glyma.17G053900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 4097465-4098464 Glycine max
Glyma.17G053900 1.0kb downstream 1.0kb downstream 7393   true Chr17: 4098465-4105857 Glycine max
Glyma.17G053900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 4104858-4105857 Glycine max
Glyma.17G053900 2.0kb upstream 2.0kb upstream 8393   true Chr17: 4096465-4104857 Glycine max
Glyma.17G053900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 4096465-4098464 Glycine max
Glyma.17G053900 2.0kb downstream 2.0kb downstream 8393   true Chr17: 4098465-4106857 Glycine max
Glyma.17G053900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 4104858-4106857 Glycine max
Glyma.17G053900 5.0kb upstream 5.0kb upstream 11393   true Chr17: 4093465-4104857 Glycine max
Glyma.17G053900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 4093465-4098464 Glycine max
Glyma.17G053900 5.0kb downstream 5.0kb downstream 11393   true Chr17: 4098465-4109857 Glycine max
Glyma.17G053900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 4104858-4109857 Glycine max
Glyma.17G053900 10.0kb upstream 10.0kb upstream 16393   true Chr17: 4088465-4104857 Glycine max
Glyma.17G053900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 4088465-4098464 Glycine max
Glyma.17G053900 10.0kb downstream 10.0kb downstream 16393   true Chr17: 4098465-4114857 Glycine max
Glyma.17G053900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 4104858-4114857 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299500 5265 Fabidae View MSA
124060910 5270 Rosid View MSA
123743404 5271 Pentapetalae View MSA
122790818 5272 Eudicot View MSA
122045748 5273 Angiosperm View MSA
121351318 5274 Embryophyte View MSA
123382118 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.30161 0.0 31.6174   High
cufflinks 6.09525 0.0 24.6907    
cufflinks 3.62968 0.0 14.7925   Low
cufflinks 7.28806 0.0 28.1177    
cufflinks 3.00171 0.0 12.9868   Low
cufflinks 6.41282 0.0 21.6779    
cufflinks 7.37583 0.0 29.3461    
cufflinks 4.4174 0.0 15.6777    
cufflinks 4.92153 0.0 17.0664    
cufflinks 0.376       Low
cufflinks 0.604        
cufflinks 0.859        
cufflinks 0.637        
cufflinks 0.481       Low
cufflinks 0.617        
cufflinks 0.836        
cufflinks 0.518       Low
cufflinks 1.141       High
cufflinks 1.225       High
cufflinks 1.01       High
cufflinks 0.607        
cufflinks 1.07       High
cufflinks 0.79        
cufflinks 0.679        
cufflinks 0.882        
cufflinks 0.575        

0 Strain