Gene : Glyma.17G047800 G. max Wm82.a2.v1
Defline:  (1 of 62) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  478
Name:  ? Glyma.17G047800 Secondary Identifier:  ? PAC:30480929
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G047800 0.5kb upstream 0.5kb upstream 9229   true Chr17: 3621562-3630790 Glycine max
Glyma.17G047800 0.5kb upstream 0.5kb upstream 500   false Chr17: 3630291-3630790 Glycine max
Glyma.17G047800 0.5kb downstream 0.5kb downstream 9229   true Chr17: 3621062-3630290 Glycine max
Glyma.17G047800 0.5kb downstream 0.5kb downstream 500   false Chr17: 3621062-3621561 Glycine max
Glyma.17G047800 1.0kb upstream 1.0kb upstream 9729   true Chr17: 3621562-3631290 Glycine max
Glyma.17G047800 1.0kb upstream 1.0kb upstream 1000   false Chr17: 3630291-3631290 Glycine max
Glyma.17G047800 1.0kb downstream 1.0kb downstream 9729   true Chr17: 3620562-3630290 Glycine max
Glyma.17G047800 1.0kb downstream 1.0kb downstream 1000   false Chr17: 3620562-3621561 Glycine max
Glyma.17G047800 2.0kb upstream 2.0kb upstream 10729   true Chr17: 3621562-3632290 Glycine max
Glyma.17G047800 2.0kb upstream 2.0kb upstream 2000   false Chr17: 3630291-3632290 Glycine max
Glyma.17G047800 2.0kb downstream 2.0kb downstream 10729   true Chr17: 3619562-3630290 Glycine max
Glyma.17G047800 2.0kb downstream 2.0kb downstream 2000   false Chr17: 3619562-3621561 Glycine max
Glyma.17G047800 5.0kb upstream 5.0kb upstream 13729   true Chr17: 3621562-3635290 Glycine max
Glyma.17G047800 5.0kb upstream 5.0kb upstream 5000   false Chr17: 3630291-3635290 Glycine max
Glyma.17G047800 5.0kb downstream 5.0kb downstream 13729   true Chr17: 3616562-3630290 Glycine max
Glyma.17G047800 5.0kb downstream 5.0kb downstream 5000   false Chr17: 3616562-3621561 Glycine max
Glyma.17G047800 10.0kb upstream 10.0kb upstream 18729   true Chr17: 3621562-3640290 Glycine max
Glyma.17G047800 10.0kb upstream 10.0kb upstream 10000   false Chr17: 3630291-3640290 Glycine max
Glyma.17G047800 10.0kb downstream 10.0kb downstream 18729   true Chr17: 3611562-3630290 Glycine max
Glyma.17G047800 10.0kb downstream 10.0kb downstream 10000   false Chr17: 3611562-3621561 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
122302558 5265 Fabidae View MSA
124066643 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.90878 0.0 16.5298    
cufflinks 8.69009 0.0 23.6056    
cufflinks 3.93878 0.0 11.5583   Low
cufflinks 12.2971 0.0 32.9063   High
cufflinks 8.4601 0.0 22.9841    
cufflinks 5.66229 0.0 15.8868    
cufflinks 11.5988 0.0 31.0761    
cufflinks 13.834 0.0 36.9391   High
cufflinks 6.8483 0.0 18.8932    
cufflinks 3.218        
cufflinks 0.459       Low
cufflinks 1.329        
cufflinks 1.994        
cufflinks 1.954        
cufflinks 0.395       Low
cufflinks 3.276        
cufflinks 0.99        
cufflinks 1.559        
cufflinks 2.432        
cufflinks 3.648       High
cufflinks 0.599       Low
cufflinks 3.454       High
cufflinks 3.769       High
cufflinks 0.579       Low
cufflinks 3.644       High
cufflinks 0.778        

0 Strain