Gene : Glyma.17G050000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22893:SF67 - 12-OXOPHYTODIENOATE REDUCTASE 3 Genomic Order:  500
Name:  ? Glyma.17G050000 Secondary Identifier:  ? PAC:30478759
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G050000 0.5kb upstream 0.5kb upstream 4575   true Chr17: 3790052-3794626 Glycine max
Glyma.17G050000 0.5kb upstream 0.5kb upstream 500   false Chr17: 3794127-3794626 Glycine max
Glyma.17G050000 0.5kb downstream 0.5kb downstream 4575   true Chr17: 3789552-3794126 Glycine max
Glyma.17G050000 0.5kb downstream 0.5kb downstream 500   false Chr17: 3789552-3790051 Glycine max
Glyma.17G050000 1.0kb upstream 1.0kb upstream 5075   true Chr17: 3790052-3795126 Glycine max
Glyma.17G050000 1.0kb upstream 1.0kb upstream 1000   false Chr17: 3794127-3795126 Glycine max
Glyma.17G050000 1.0kb downstream 1.0kb downstream 5075   true Chr17: 3789052-3794126 Glycine max
Glyma.17G050000 1.0kb downstream 1.0kb downstream 1000   false Chr17: 3789052-3790051 Glycine max
Glyma.17G050000 2.0kb upstream 2.0kb upstream 6075   true Chr17: 3790052-3796126 Glycine max
Glyma.17G050000 2.0kb upstream 2.0kb upstream 2000   false Chr17: 3794127-3796126 Glycine max
Glyma.17G050000 2.0kb downstream 2.0kb downstream 6075   true Chr17: 3788052-3794126 Glycine max
Glyma.17G050000 2.0kb downstream 2.0kb downstream 2000   false Chr17: 3788052-3790051 Glycine max
Glyma.17G050000 5.0kb upstream 5.0kb upstream 9075   true Chr17: 3790052-3799126 Glycine max
Glyma.17G050000 5.0kb upstream 5.0kb upstream 5000   false Chr17: 3794127-3799126 Glycine max
Glyma.17G050000 5.0kb downstream 5.0kb downstream 9075   true Chr17: 3785052-3794126 Glycine max
Glyma.17G050000 5.0kb downstream 5.0kb downstream 5000   false Chr17: 3785052-3790051 Glycine max
Glyma.17G050000 10.0kb upstream 10.0kb upstream 14075   true Chr17: 3790052-3804126 Glycine max
Glyma.17G050000 10.0kb upstream 10.0kb upstream 10000   false Chr17: 3794127-3804126 Glycine max
Glyma.17G050000 10.0kb downstream 10.0kb downstream 14075   true Chr17: 3780052-3794126 Glycine max
Glyma.17G050000 10.0kb downstream 10.0kb downstream 10000   false Chr17: 3780052-3790051 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305321 5265 Fabidae View MSA
124067438 5270 Rosid View MSA
123752843 5271 Pentapetalae View MSA
122793200 5272 Eudicot View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.48318 0.0 20.7578    
cufflinks 9.18949 0.0 25.0962    
cufflinks 8.10757 0.0 22.2784    
cufflinks 13.2021 0.0 35.3949   High
cufflinks 4.65641 0.0 13.6152    
cufflinks 2.47556 0.0 7.90581   Low
cufflinks 9.25557 0.0 25.2584    
cufflinks 11.7928 0.0 31.7338    
cufflinks 6.63923 0.0 18.614    
cufflinks 6.567        
cufflinks 2.143        
cufflinks 4.618        
cufflinks 2.474        
cufflinks 1.529       Low
cufflinks 0.988       Low
cufflinks 5.696        
cufflinks 10.233     High High
cufflinks 4.832        
cufflinks 5.261        
cufflinks 6.135        
cufflinks 2.584        
cufflinks 6.255        
cufflinks 5.634        
cufflinks 2.042       Low
cufflinks 5.936        
cufflinks 6.192        

0 Strain