Gene : Glyma.17G043200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR13683:SF296 - ASPARTYL PROTEASE FAMILY PROTEIN Genomic Order:  432
Name:  ? Glyma.17G043200 Secondary Identifier:  ? PAC:30479194
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G043200 0.5kb upstream 0.5kb upstream 4604   true Chr17: 3211338-3215941 Glycine max
Glyma.17G043200 0.5kb upstream 0.5kb upstream 500   false Chr17: 3211338-3211837 Glycine max
Glyma.17G043200 0.5kb downstream 0.5kb downstream 4604   true Chr17: 3211838-3216441 Glycine max
Glyma.17G043200 0.5kb downstream 0.5kb downstream 500   false Chr17: 3215942-3216441 Glycine max
Glyma.17G043200 1.0kb upstream 1.0kb upstream 5104   true Chr17: 3210838-3215941 Glycine max
Glyma.17G043200 1.0kb upstream 1.0kb upstream 1000   false Chr17: 3210838-3211837 Glycine max
Glyma.17G043200 1.0kb downstream 1.0kb downstream 5104   true Chr17: 3211838-3216941 Glycine max
Glyma.17G043200 1.0kb downstream 1.0kb downstream 1000   false Chr17: 3215942-3216941 Glycine max
Glyma.17G043200 2.0kb upstream 2.0kb upstream 6104   true Chr17: 3209838-3215941 Glycine max
Glyma.17G043200 2.0kb upstream 2.0kb upstream 2000   false Chr17: 3209838-3211837 Glycine max
Glyma.17G043200 2.0kb downstream 2.0kb downstream 6104   true Chr17: 3211838-3217941 Glycine max
Glyma.17G043200 2.0kb downstream 2.0kb downstream 2000   false Chr17: 3215942-3217941 Glycine max
Glyma.17G043200 5.0kb upstream 5.0kb upstream 9104   true Chr17: 3206838-3215941 Glycine max
Glyma.17G043200 5.0kb upstream 5.0kb upstream 5000   false Chr17: 3206838-3211837 Glycine max
Glyma.17G043200 5.0kb downstream 5.0kb downstream 9104   true Chr17: 3211838-3220941 Glycine max
Glyma.17G043200 5.0kb downstream 5.0kb downstream 5000   false Chr17: 3215942-3220941 Glycine max
Glyma.17G043200 10.0kb upstream 10.0kb upstream 14104   true Chr17: 3201838-3215941 Glycine max
Glyma.17G043200 10.0kb upstream 10.0kb upstream 10000   false Chr17: 3201838-3211837 Glycine max
Glyma.17G043200 10.0kb downstream 10.0kb downstream 14104   true Chr17: 3211838-3225941 Glycine max
Glyma.17G043200 10.0kb downstream 10.0kb downstream 10000   false Chr17: 3215942-3225941 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780043 5273 Angiosperm View MSA
122311661 5265 Fabidae View MSA
124071121 5270 Rosid View MSA
123744877 5271 Pentapetalae View MSA
122771281 5272 Eudicot View MSA
121051677 5274 Embryophyte View MSA
123428778 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.511241 0.0 1.87471    
cufflinks 1.83166 0.0 5.98989    
cufflinks 2.94614 0.0 8.95301    
cufflinks 15.6703 0.0 41.8065   High
cufflinks 0.3678 0.0 1.37225    
cufflinks 0.0201223 0.0 0.0862344 Low Low
cufflinks 10.2678 0.0 27.6645    
cufflinks 9.00261 0.0 24.4042    
cufflinks 1.15878 0.0 4.00024    
cufflinks 12.472     High High
cufflinks 0.024     Low Low
cufflinks 0.971        
cufflinks 0.059     Low  
cufflinks 0.034     Low Low
cufflinks 0.157        
cufflinks 0.735        
cufflinks 0.21        
cufflinks 1.39        
cufflinks 4.181       High
cufflinks 1.271        
cufflinks 0.026     Low Low
cufflinks 1.729        
cufflinks 10.097     High High
cufflinks 0.037     Low Low
cufflinks 1.364        
cufflinks 0.059     Low  

0 Strain