Gene : Glyma.17G038900 G. max Wm82.a2.v1
Defline:  (1 of 24) KOG1987 - Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains Genomic Order:  389
Name:  ? Glyma.17G038900 Secondary Identifier:  ? PAC:30478758
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G038900 0.5kb upstream 0.5kb upstream 3216   true Chr17: 2885243-2888458 Glycine max
Glyma.17G038900 0.5kb upstream 0.5kb upstream 500   false Chr17: 2885243-2885742 Glycine max
Glyma.17G038900 0.5kb downstream 0.5kb downstream 3216   true Chr17: 2885743-2888958 Glycine max
Glyma.17G038900 0.5kb downstream 0.5kb downstream 500   false Chr17: 2888459-2888958 Glycine max
Glyma.17G038900 1.0kb upstream 1.0kb upstream 3716   true Chr17: 2884743-2888458 Glycine max
Glyma.17G038900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 2884743-2885742 Glycine max
Glyma.17G038900 1.0kb downstream 1.0kb downstream 3716   true Chr17: 2885743-2889458 Glycine max
Glyma.17G038900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 2888459-2889458 Glycine max
Glyma.17G038900 2.0kb upstream 2.0kb upstream 4716   true Chr17: 2883743-2888458 Glycine max
Glyma.17G038900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 2883743-2885742 Glycine max
Glyma.17G038900 2.0kb downstream 2.0kb downstream 4716   true Chr17: 2885743-2890458 Glycine max
Glyma.17G038900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 2888459-2890458 Glycine max
Glyma.17G038900 5.0kb upstream 5.0kb upstream 7716   true Chr17: 2880743-2888458 Glycine max
Glyma.17G038900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 2880743-2885742 Glycine max
Glyma.17G038900 5.0kb downstream 5.0kb downstream 7716   true Chr17: 2885743-2893458 Glycine max
Glyma.17G038900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 2888459-2893458 Glycine max
Glyma.17G038900 10.0kb upstream 10.0kb upstream 12716   true Chr17: 2875743-2888458 Glycine max
Glyma.17G038900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 2875743-2885742 Glycine max
Glyma.17G038900 10.0kb downstream 10.0kb downstream 12716   true Chr17: 2885743-2898458 Glycine max
Glyma.17G038900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 2888459-2898458 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029521 5273 Angiosperm View MSA
122301823 5265 Fabidae View MSA
124073089 5270 Rosid View MSA
123752970 5271 Pentapetalae View MSA
122797935 5272 Eudicot View MSA
123429159 5275 Viridiplantae View MSA
121349273 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0622034 0.0 0.257945 Low  
cufflinks 1.0553E-4 0.0 0.00294384 Low Low
cufflinks 0.0802383 0.0 0.327547 Low  
cufflinks 0.0925453 0.0 0.375952 Low  
cufflinks 0.080776 0.0 0.330255 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0207848 0.0 0.0940713 Low  
cufflinks 0.0644486 0.0 0.26678 Low  
cufflinks 0.077     Low  
cufflinks 0.069        
cufflinks 0.018     Low  
cufflinks 0.143       High
cufflinks 0.011     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.044     Low  
cufflinks 0.071     Low  
cufflinks 0.004     Low Low
cufflinks 0.052     Low  
cufflinks 0.071        
cufflinks 0.055     Low  
cufflinks 0.012     Low Low
cufflinks 0.022     Low  
cufflinks 0.08     Low  
cufflinks 0.048     Low  

0 Strain