Gene : Glyma.17G078400 G. max Wm82.a2.v1
Defline:  (1 of 477) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  784
Name:  ? Glyma.17G078400 Secondary Identifier:  ? PAC:30481812
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G078400 0.5kb upstream 0.5kb upstream 3698   true Chr17: 6118030-6121727 Glycine max
Glyma.17G078400 0.5kb upstream 0.5kb upstream 500   false Chr17: 6121228-6121727 Glycine max
Glyma.17G078400 0.5kb downstream 0.5kb downstream 3698   true Chr17: 6117530-6121227 Glycine max
Glyma.17G078400 0.5kb downstream 0.5kb downstream 500   false Chr17: 6117530-6118029 Glycine max
Glyma.17G078400 1.0kb upstream 1.0kb upstream 4198   true Chr17: 6118030-6122227 Glycine max
Glyma.17G078400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6121228-6122227 Glycine max
Glyma.17G078400 1.0kb downstream 1.0kb downstream 4198   true Chr17: 6117030-6121227 Glycine max
Glyma.17G078400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6117030-6118029 Glycine max
Glyma.17G078400 2.0kb upstream 2.0kb upstream 5198   true Chr17: 6118030-6123227 Glycine max
Glyma.17G078400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6121228-6123227 Glycine max
Glyma.17G078400 2.0kb downstream 2.0kb downstream 5198   true Chr17: 6116030-6121227 Glycine max
Glyma.17G078400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6116030-6118029 Glycine max
Glyma.17G078400 5.0kb upstream 5.0kb upstream 8198   true Chr17: 6118030-6126227 Glycine max
Glyma.17G078400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6121228-6126227 Glycine max
Glyma.17G078400 5.0kb downstream 5.0kb downstream 8198   true Chr17: 6113030-6121227 Glycine max
Glyma.17G078400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6113030-6118029 Glycine max
Glyma.17G078400 10.0kb upstream 10.0kb upstream 13198   true Chr17: 6118030-6131227 Glycine max
Glyma.17G078400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6121228-6131227 Glycine max
Glyma.17G078400 10.0kb downstream 10.0kb downstream 13198   true Chr17: 6108030-6121227 Glycine max
Glyma.17G078400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6108030-6118029 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310941 5265 Fabidae View MSA
124065673 5270 Rosid View MSA
123747878 5271 Pentapetalae View MSA
122791665 5272 Eudicot View MSA
122044174 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121348177 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 113.636 0.0 335.966 High High
cufflinks 53.8632 0.0 146.488 High  
cufflinks 29.7827 0.0 79.4661 High Low
cufflinks 52.302 0.0 142.114 High  
cufflinks 85.6189 0.0 243.409 High  
cufflinks 55.9397 0.0 152.766 High  
cufflinks 41.5842 0.0 111.691 High  
cufflinks 75.6813 0.0 211.542 High  
cufflinks 62.9437 0.0 173.198 High  
cufflinks 23.097     High  
cufflinks 2.228       Low
cufflinks 20.458     High  
cufflinks 50.45     High High
cufflinks 76.785     High High
cufflinks 4.324       Low
cufflinks 12.545     High  
cufflinks 12.591     High  
cufflinks 18.474     High  
cufflinks 30.633     High  
cufflinks 6.843        
cufflinks 5.987     High  
cufflinks 9.514     High  
cufflinks 16.076     High  
cufflinks 3.459       Low
cufflinks 10.213     High  
cufflinks 10.743     High  

0 Strain