Gene : Glyma.17G078900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23344//PTHR23344:SF19 - GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE Genomic Order:  789
Name:  ? Glyma.17G078900 Secondary Identifier:  ? PAC:30478915
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7409 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G078900 0.5kb upstream 0.5kb upstream 4640   true Chr17: 6139318-6143957 Glycine max
Glyma.17G078900 0.5kb upstream 0.5kb upstream 500   false Chr17: 6143458-6143957 Glycine max
Glyma.17G078900 0.5kb downstream 0.5kb downstream 4640   true Chr17: 6138818-6143457 Glycine max
Glyma.17G078900 0.5kb downstream 0.5kb downstream 500   false Chr17: 6138818-6139317 Glycine max
Glyma.17G078900 1.0kb upstream 1.0kb upstream 5140   true Chr17: 6139318-6144457 Glycine max
Glyma.17G078900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6143458-6144457 Glycine max
Glyma.17G078900 1.0kb downstream 1.0kb downstream 5140   true Chr17: 6138318-6143457 Glycine max
Glyma.17G078900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6138318-6139317 Glycine max
Glyma.17G078900 2.0kb upstream 2.0kb upstream 6140   true Chr17: 6139318-6145457 Glycine max
Glyma.17G078900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6143458-6145457 Glycine max
Glyma.17G078900 2.0kb downstream 2.0kb downstream 6140   true Chr17: 6137318-6143457 Glycine max
Glyma.17G078900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6137318-6139317 Glycine max
Glyma.17G078900 5.0kb upstream 5.0kb upstream 9140   true Chr17: 6139318-6148457 Glycine max
Glyma.17G078900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6143458-6148457 Glycine max
Glyma.17G078900 5.0kb downstream 5.0kb downstream 9140   true Chr17: 6134318-6143457 Glycine max
Glyma.17G078900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6134318-6139317 Glycine max
Glyma.17G078900 10.0kb upstream 10.0kb upstream 14140   true Chr17: 6139318-6153457 Glycine max
Glyma.17G078900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6143458-6153457 Glycine max
Glyma.17G078900 10.0kb downstream 10.0kb downstream 14140   true Chr17: 6129318-6143457 Glycine max
Glyma.17G078900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6129318-6139317 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301995 5265 Fabidae View MSA
124061908 5270 Rosid View MSA
123737505 5271 Pentapetalae View MSA
122790009 5272 Eudicot View MSA
122046255 5273 Angiosperm View MSA
121345517 5274 Embryophyte View MSA
123425927 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.01164 0.0 12.6494   Low
cufflinks 9.83312 0.0 27.5564    
cufflinks 4.59383 0.0 14.1069    
cufflinks 27.8162 0.0 74.2265 High High
cufflinks 6.67936 0.0 19.6341    
cufflinks 6.90991 0.0 20.1988    
cufflinks 9.17837 0.0 25.9437    
cufflinks 9.3085 0.0 26.1978    
cufflinks 5.32907 0.0 16.1143    
cufflinks 4.421       High
cufflinks 2.262        
cufflinks 2.706        
cufflinks 2.783        
cufflinks 2.294        
cufflinks 1.391       Low
cufflinks 3.203        
cufflinks 1.249       Low
cufflinks 4.706       High
cufflinks 3.887        
cufflinks 2.97        
cufflinks 2.856        
cufflinks 2.779        
cufflinks 3.593        
cufflinks 2.077        
cufflinks 3.513        
cufflinks 1.668       Low

0 Strain