Gene : Glyma.17G079400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12323 - SR-RELATED CTD ASSOCIATED FACTOR 6 Genomic Order:  794
Name:  ? Glyma.17G079400 Secondary Identifier:  ? PAC:30480295
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G079400 0.5kb upstream 0.5kb upstream 5711   true Chr17: 6161396-6167106 Glycine max
Glyma.17G079400 0.5kb upstream 0.5kb upstream 500   false Chr17: 6161396-6161895 Glycine max
Glyma.17G079400 0.5kb downstream 0.5kb downstream 5711   true Chr17: 6161896-6167606 Glycine max
Glyma.17G079400 0.5kb downstream 0.5kb downstream 500   false Chr17: 6167107-6167606 Glycine max
Glyma.17G079400 1.0kb upstream 1.0kb upstream 6211   true Chr17: 6160896-6167106 Glycine max
Glyma.17G079400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6160896-6161895 Glycine max
Glyma.17G079400 1.0kb downstream 1.0kb downstream 6211   true Chr17: 6161896-6168106 Glycine max
Glyma.17G079400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6167107-6168106 Glycine max
Glyma.17G079400 2.0kb upstream 2.0kb upstream 7211   true Chr17: 6159896-6167106 Glycine max
Glyma.17G079400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6159896-6161895 Glycine max
Glyma.17G079400 2.0kb downstream 2.0kb downstream 7211   true Chr17: 6161896-6169106 Glycine max
Glyma.17G079400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6167107-6169106 Glycine max
Glyma.17G079400 5.0kb upstream 5.0kb upstream 10211   true Chr17: 6156896-6167106 Glycine max
Glyma.17G079400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6156896-6161895 Glycine max
Glyma.17G079400 5.0kb downstream 5.0kb downstream 10211   true Chr17: 6161896-6172106 Glycine max
Glyma.17G079400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6167107-6172106 Glycine max
Glyma.17G079400 10.0kb upstream 10.0kb upstream 15211   true Chr17: 6151896-6167106 Glycine max
Glyma.17G079400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6151896-6161895 Glycine max
Glyma.17G079400 10.0kb downstream 10.0kb downstream 15211   true Chr17: 6161896-6177106 Glycine max
Glyma.17G079400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6167107-6177106 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309083 5265 Fabidae View MSA
124061186 5270 Rosid View MSA
123740040 5271 Pentapetalae View MSA
122786673 5272 Eudicot View MSA
122044059 5273 Angiosperm View MSA
121346189 5274 Embryophyte View MSA
123424893 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.26315 0.0 21.831   High
cufflinks 5.59423 0.0 17.08    
cufflinks 6.48625 0.0 19.56    
cufflinks 6.09665 0.0 18.4022    
cufflinks 5.73076 0.0 17.4486    
cufflinks 3.24801 0.0 10.6575   Low
cufflinks 5.29527 0.0 16.2589    
cufflinks 4.81641 0.0 14.9396    
cufflinks 4.27752 0.0 13.4155    
cufflinks 2.697        
cufflinks 1.285       Low
cufflinks 3.616        
cufflinks 2.65        
cufflinks 3.153        
cufflinks 1.49       Low
cufflinks 3.734        
cufflinks 2.572        
cufflinks 3.284        
cufflinks 4.552       High
cufflinks 3.676        
cufflinks 1.588       Low
cufflinks 3.653        
cufflinks 4.888       High
cufflinks 1.941        
cufflinks 3.456        
cufflinks 2.277        

0 Strain