Gene : Glyma.17G108000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11735:SF14 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Genomic Order:  1080
Name:  ? Glyma.17G108000 Secondary Identifier:  ? PAC:30480566
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY0-1587 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G108000 0.5kb upstream 0.5kb upstream 3351   true Chr17: 8474602-8477952 Glycine max
Glyma.17G108000 0.5kb upstream 0.5kb upstream 500   false Chr17: 8477453-8477952 Glycine max
Glyma.17G108000 0.5kb downstream 0.5kb downstream 3351   true Chr17: 8474102-8477452 Glycine max
Glyma.17G108000 0.5kb downstream 0.5kb downstream 500   false Chr17: 8474102-8474601 Glycine max
Glyma.17G108000 1.0kb upstream 1.0kb upstream 3851   true Chr17: 8474602-8478452 Glycine max
Glyma.17G108000 1.0kb upstream 1.0kb upstream 1000   false Chr17: 8477453-8478452 Glycine max
Glyma.17G108000 1.0kb downstream 1.0kb downstream 3851   true Chr17: 8473602-8477452 Glycine max
Glyma.17G108000 1.0kb downstream 1.0kb downstream 1000   false Chr17: 8473602-8474601 Glycine max
Glyma.17G108000 2.0kb upstream 2.0kb upstream 4851   true Chr17: 8474602-8479452 Glycine max
Glyma.17G108000 2.0kb upstream 2.0kb upstream 2000   false Chr17: 8477453-8479452 Glycine max
Glyma.17G108000 2.0kb downstream 2.0kb downstream 4851   true Chr17: 8472602-8477452 Glycine max
Glyma.17G108000 2.0kb downstream 2.0kb downstream 2000   false Chr17: 8472602-8474601 Glycine max
Glyma.17G108000 5.0kb upstream 5.0kb upstream 7851   true Chr17: 8474602-8482452 Glycine max
Glyma.17G108000 5.0kb upstream 5.0kb upstream 5000   false Chr17: 8477453-8482452 Glycine max
Glyma.17G108000 5.0kb downstream 5.0kb downstream 7851   true Chr17: 8469602-8477452 Glycine max
Glyma.17G108000 5.0kb downstream 5.0kb downstream 5000   false Chr17: 8469602-8474601 Glycine max
Glyma.17G108000 10.0kb upstream 10.0kb upstream 12851   true Chr17: 8474602-8487452 Glycine max
Glyma.17G108000 10.0kb upstream 10.0kb upstream 10000   false Chr17: 8477453-8487452 Glycine max
Glyma.17G108000 10.0kb downstream 10.0kb downstream 12851   true Chr17: 8464602-8477452 Glycine max
Glyma.17G108000 10.0kb downstream 10.0kb downstream 10000   false Chr17: 8464602-8474601 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298990 5265 Fabidae View MSA
124066071 5270 Rosid View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.9153 0.0 46.7446   High
cufflinks 6.01071 0.0 21.5492    
cufflinks 4.31713 0.0 17.0768    
cufflinks 5.16049 0.0 19.3454    
cufflinks 4.8557 0.0 18.4269    
cufflinks 3.31485 0.0 14.2322   Low
cufflinks 8.52346 0.0 27.9619    
cufflinks 4.10013 0.0 16.4288    
cufflinks 4.97073 0.0 18.7056    
cufflinks 0.896       Low
cufflinks 1.312        
cufflinks 1.567        
cufflinks 1.112        
cufflinks 1.193        
cufflinks 1.379        
cufflinks 2.131       High
cufflinks 1.39        
cufflinks 1.202        
cufflinks 1.977        
cufflinks 2.343       High
cufflinks 1.262        
cufflinks 2.038       High
cufflinks 1.731        
cufflinks 0.876       Low
cufflinks 2.201       High
cufflinks 1.844        

0 Strain