Gene : Glyma.17G100600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11540:SF14 - MALATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  1006
Name:  ? Glyma.17G100600 Secondary Identifier:  ? PAC:30479709
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLUCONEO-PWY Glycine max pathologic  
Gmax GLYOXYLATE-BYPASS Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PWY-561 Glycine max pathologic  
Gmax PWY-5690 Glycine max pathologic  
Gmax PWY-7115 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G100600 0.5kb upstream 0.5kb upstream 2626   true Chr17: 7917204-7919829 Glycine max
Glyma.17G100600 0.5kb upstream 0.5kb upstream 500   false Chr17: 7919330-7919829 Glycine max
Glyma.17G100600 0.5kb downstream 0.5kb downstream 2626   true Chr17: 7916704-7919329 Glycine max
Glyma.17G100600 0.5kb downstream 0.5kb downstream 500   false Chr17: 7916704-7917203 Glycine max
Glyma.17G100600 1.0kb upstream 1.0kb upstream 3126   true Chr17: 7917204-7920329 Glycine max
Glyma.17G100600 1.0kb upstream 1.0kb upstream 1000   false Chr17: 7919330-7920329 Glycine max
Glyma.17G100600 1.0kb downstream 1.0kb downstream 3126   true Chr17: 7916204-7919329 Glycine max
Glyma.17G100600 1.0kb downstream 1.0kb downstream 1000   false Chr17: 7916204-7917203 Glycine max
Glyma.17G100600 2.0kb upstream 2.0kb upstream 4126   true Chr17: 7917204-7921329 Glycine max
Glyma.17G100600 2.0kb upstream 2.0kb upstream 2000   false Chr17: 7919330-7921329 Glycine max
Glyma.17G100600 2.0kb downstream 2.0kb downstream 4126   true Chr17: 7915204-7919329 Glycine max
Glyma.17G100600 2.0kb downstream 2.0kb downstream 2000   false Chr17: 7915204-7917203 Glycine max
Glyma.17G100600 5.0kb upstream 5.0kb upstream 7126   true Chr17: 7917204-7924329 Glycine max
Glyma.17G100600 5.0kb upstream 5.0kb upstream 5000   false Chr17: 7919330-7924329 Glycine max
Glyma.17G100600 5.0kb downstream 5.0kb downstream 7126   true Chr17: 7912204-7919329 Glycine max
Glyma.17G100600 5.0kb downstream 5.0kb downstream 5000   false Chr17: 7912204-7917203 Glycine max
Glyma.17G100600 10.0kb upstream 10.0kb upstream 12126   true Chr17: 7917204-7929329 Glycine max
Glyma.17G100600 10.0kb upstream 10.0kb upstream 10000   false Chr17: 7919330-7929329 Glycine max
Glyma.17G100600 10.0kb downstream 10.0kb downstream 12126   true Chr17: 7907204-7919329 Glycine max
Glyma.17G100600 10.0kb downstream 10.0kb downstream 10000   false Chr17: 7907204-7917203 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313004 5265 Fabidae View MSA
124067628 5270 Rosid View MSA
123748297 5271 Pentapetalae View MSA
122785823 5272 Eudicot View MSA
122049358 5273 Angiosperm View MSA
121344647 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.7127 0.0 193.065 High  
cufflinks 22.4252 0.0 67.4552 High  
cufflinks 13.0855 0.0 41.3261   Low
cufflinks 24.167 0.0 73.14 High  
cufflinks 61.7618 0.0 225.635 High  
cufflinks 41.0082 0.0 132.879 High  
cufflinks 73.487 0.0 284.595 High High
cufflinks 28.7531 0.0 104.038 High  
cufflinks 54.912 0.0 227.016 High  
cufflinks 9.623     High  
cufflinks 9.678     High  
cufflinks 6.905       Low
cufflinks 20.685     High High
cufflinks 26.591     High High
cufflinks 26.795     High High
cufflinks 12.553     High  
cufflinks 5.883       Low
cufflinks 11.203     High  
cufflinks 11.376     High  
cufflinks 10.544     High  
cufflinks 19.714     High  
cufflinks 12.824     High  
cufflinks 16.212     High  
cufflinks 16.278     High  
cufflinks 10.925     High  
cufflinks 11.823     High  

0 Strain