Gene : Glyma.17G091500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2 Genomic Order:  915
Name:  ? Glyma.17G091500 Secondary Identifier:  ? PAC:30482486
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G091500 0.5kb upstream 0.5kb upstream 5861   true Chr17: 7123548-7129408 Glycine max
Glyma.17G091500 0.5kb upstream 0.5kb upstream 500   false Chr17: 7128909-7129408 Glycine max
Glyma.17G091500 0.5kb downstream 0.5kb downstream 5861   true Chr17: 7123048-7128908 Glycine max
Glyma.17G091500 0.5kb downstream 0.5kb downstream 500   false Chr17: 7123048-7123547 Glycine max
Glyma.17G091500 1.0kb upstream 1.0kb upstream 6361   true Chr17: 7123548-7129908 Glycine max
Glyma.17G091500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 7128909-7129908 Glycine max
Glyma.17G091500 1.0kb downstream 1.0kb downstream 6361   true Chr17: 7122548-7128908 Glycine max
Glyma.17G091500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 7122548-7123547 Glycine max
Glyma.17G091500 2.0kb upstream 2.0kb upstream 7361   true Chr17: 7123548-7130908 Glycine max
Glyma.17G091500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 7128909-7130908 Glycine max
Glyma.17G091500 2.0kb downstream 2.0kb downstream 7361   true Chr17: 7121548-7128908 Glycine max
Glyma.17G091500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 7121548-7123547 Glycine max
Glyma.17G091500 5.0kb upstream 5.0kb upstream 10361   true Chr17: 7123548-7133908 Glycine max
Glyma.17G091500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 7128909-7133908 Glycine max
Glyma.17G091500 5.0kb downstream 5.0kb downstream 10361   true Chr17: 7118548-7128908 Glycine max
Glyma.17G091500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 7118548-7123547 Glycine max
Glyma.17G091500 10.0kb upstream 10.0kb upstream 15361   true Chr17: 7123548-7138908 Glycine max
Glyma.17G091500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 7128909-7138908 Glycine max
Glyma.17G091500 10.0kb downstream 10.0kb downstream 15361   true Chr17: 7113548-7128908 Glycine max
Glyma.17G091500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 7113548-7123547 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306154 5265 Fabidae View MSA
124065042 5270 Rosid View MSA
123747025 5271 Pentapetalae View MSA
122788970 5272 Eudicot View MSA
122044390 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.04889 0.0 5.99655    
cufflinks 3.55926 0.0 9.81098    
cufflinks 1.45664 0.0 4.45516   Low
cufflinks 4.79591 0.0 12.9629   High
cufflinks 2.54233 0.0 7.24983    
cufflinks 1.15914 0.0 3.66886   Low
cufflinks 3.94069 0.0 10.7973    
cufflinks 3.23218 0.0 8.98163    
cufflinks 2.88007 0.0 8.0927    
cufflinks 1.721        
cufflinks 0.307       Low
cufflinks 2.154        
cufflinks 1.318        
cufflinks 1.34        
cufflinks 1.348        
cufflinks 2.457        
cufflinks 1.169        
cufflinks 2.666        
cufflinks 3.648        
cufflinks 3.789        
cufflinks 0.281       Low
cufflinks 3.855       High
cufflinks 3.291        
cufflinks 0.175       Low
cufflinks 3.619        
cufflinks 0.76        

0 Strain