Gene : Glyma.17G126900 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1269
Name:  ? Glyma.17G126900 Secondary Identifier:  ? PAC:30479856
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G126900 0.5kb upstream 0.5kb upstream 2423   true Chr17: 10128905-10131327 Glycine max
Glyma.17G126900 0.5kb upstream 0.5kb upstream 500   false Chr17: 10130828-10131327 Glycine max
Glyma.17G126900 0.5kb downstream 0.5kb downstream 2423   true Chr17: 10128405-10130827 Glycine max
Glyma.17G126900 0.5kb downstream 0.5kb downstream 500   false Chr17: 10128405-10128904 Glycine max
Glyma.17G126900 1.0kb upstream 1.0kb upstream 2923   true Chr17: 10128905-10131827 Glycine max
Glyma.17G126900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 10130828-10131827 Glycine max
Glyma.17G126900 1.0kb downstream 1.0kb downstream 2923   true Chr17: 10127905-10130827 Glycine max
Glyma.17G126900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 10127905-10128904 Glycine max
Glyma.17G126900 2.0kb upstream 2.0kb upstream 3923   true Chr17: 10128905-10132827 Glycine max
Glyma.17G126900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 10130828-10132827 Glycine max
Glyma.17G126900 2.0kb downstream 2.0kb downstream 3923   true Chr17: 10126905-10130827 Glycine max
Glyma.17G126900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 10126905-10128904 Glycine max
Glyma.17G126900 5.0kb upstream 5.0kb upstream 6923   true Chr17: 10128905-10135827 Glycine max
Glyma.17G126900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 10130828-10135827 Glycine max
Glyma.17G126900 5.0kb downstream 5.0kb downstream 6923   true Chr17: 10123905-10130827 Glycine max
Glyma.17G126900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 10123905-10128904 Glycine max
Glyma.17G126900 10.0kb upstream 10.0kb upstream 11923   true Chr17: 10128905-10140827 Glycine max
Glyma.17G126900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 10130828-10140827 Glycine max
Glyma.17G126900 10.0kb downstream 10.0kb downstream 11923   true Chr17: 10118905-10130827 Glycine max
Glyma.17G126900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 10118905-10128904 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310699 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.633753 0.0 3.20028   Low
cufflinks 1.34814 0.0 8.61411    
cufflinks 12.4043 0.0 46.0118   High
cufflinks 2.43566 0.0 14.3803    
cufflinks 0.85916 0.0 5.60921    
cufflinks 17.9677 0.0 69.4199   High
cufflinks 0.70788 0.0 5.12306    
cufflinks 3.15539 0.0 13.3056    
cufflinks 1.26553 0.0 8.68646    
cufflinks 0.264        
cufflinks 0.204        
cufflinks 0.718       High
cufflinks 0.372        
cufflinks 0.2        
cufflinks 0.115       Low
cufflinks 0.136        
cufflinks 0.193        
cufflinks 0.655       High
cufflinks 0.206        
cufflinks 0.196        
cufflinks 0.31        
cufflinks 0.25        
cufflinks 0.073     Low Low
cufflinks 0.35        
cufflinks 0.151        
cufflinks 0.182        

0 Strain