Gene : Glyma.17G127400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11349:SF44 - NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC Genomic Order:  1274
Name:  ? Glyma.17G127400 Secondary Identifier:  ? PAC:30482134
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Sequence Feature Displayer

Ontology Annotation Displayer

21 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY0-162 Glycine max pathologic  
Gmax PWY-6126 Glycine max pathologic  
Gmax PWY-6545 Glycine max pathologic  
Gmax PWY-7176 Glycine max pathologic  
Gmax PWY-7184 Glycine max pathologic  
Gmax PWY-7196 Glycine max pathologic  
Gmax PWY-7197 Glycine max pathologic  
Gmax PWY-7200 Glycine max pathologic  
Gmax PWY-7205 Glycine max pathologic  
Gmax PWY-7208 Glycine max pathologic  
Gmax PWY-7210 Glycine max pathologic  
Gmax PWY-7211 Glycine max pathologic  
Gmax PWY-7220 Glycine max pathologic  
Gmax PWY-7221 Glycine max pathologic  
Gmax PWY-7222 Glycine max pathologic  
Gmax PWY-7224 Glycine max pathologic  
Gmax PWY-7226 Glycine max pathologic  
Gmax PWY-7227 Glycine max pathologic  
Gmax PWY-7228 Glycine max pathologic  
Gmax PWY-7229 Glycine max pathologic  
Gmax PWY-841 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G127400 0.5kb upstream 0.5kb upstream 4881   true Chr17: 10172480-10177360 Glycine max
Glyma.17G127400 0.5kb upstream 0.5kb upstream 500   false Chr17: 10176861-10177360 Glycine max
Glyma.17G127400 0.5kb downstream 0.5kb downstream 4881   true Chr17: 10171980-10176860 Glycine max
Glyma.17G127400 0.5kb downstream 0.5kb downstream 500   false Chr17: 10171980-10172479 Glycine max
Glyma.17G127400 1.0kb upstream 1.0kb upstream 5381   true Chr17: 10172480-10177860 Glycine max
Glyma.17G127400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 10176861-10177860 Glycine max
Glyma.17G127400 1.0kb downstream 1.0kb downstream 5381   true Chr17: 10171480-10176860 Glycine max
Glyma.17G127400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 10171480-10172479 Glycine max
Glyma.17G127400 2.0kb upstream 2.0kb upstream 6381   true Chr17: 10172480-10178860 Glycine max
Glyma.17G127400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 10176861-10178860 Glycine max
Glyma.17G127400 2.0kb downstream 2.0kb downstream 6381   true Chr17: 10170480-10176860 Glycine max
Glyma.17G127400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 10170480-10172479 Glycine max
Glyma.17G127400 5.0kb upstream 5.0kb upstream 9381   true Chr17: 10172480-10181860 Glycine max
Glyma.17G127400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 10176861-10181860 Glycine max
Glyma.17G127400 5.0kb downstream 5.0kb downstream 9381   true Chr17: 10167480-10176860 Glycine max
Glyma.17G127400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 10167480-10172479 Glycine max
Glyma.17G127400 10.0kb upstream 10.0kb upstream 14381   true Chr17: 10172480-10186860 Glycine max
Glyma.17G127400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 10176861-10186860 Glycine max
Glyma.17G127400 10.0kb downstream 10.0kb downstream 14381   true Chr17: 10162480-10176860 Glycine max
Glyma.17G127400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 10162480-10172479 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300564 5265 Fabidae View MSA
124063920 5270 Rosid View MSA
123743535 5271 Pentapetalae View MSA
122788809 5272 Eudicot View MSA
122050213 5273 Angiosperm View MSA
123428962 5275 Viridiplantae View MSA
121346571 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.8107 0.0 63.8042 High  
cufflinks 24.1241 0.0 64.5951 High High
cufflinks 7.74054 0.0 22.7566   Low
cufflinks 18.9416 0.0 51.1983    
cufflinks 17.7714 0.0 48.1847    
cufflinks 10.1769 0.0 28.939   Low
cufflinks 24.062 0.0 64.4266 High High
cufflinks 13.0554 0.0 36.1715    
cufflinks 12.5437 0.0 34.8594    
cufflinks 3.854        
cufflinks 1.534       Low
cufflinks 3.229        
cufflinks 2.613        
cufflinks 3.548        
cufflinks 1.521       Low
cufflinks 7.677     High High
cufflinks 1.541       Low
cufflinks 4.021        
cufflinks 5.307        
cufflinks 6.905     High High
cufflinks 1.407       Low
cufflinks 6.693       High
cufflinks 7.683     High High
cufflinks 1.457       Low
cufflinks 7.748     High High
cufflinks 1.347       Low

0 Strain