Gene : Glyma.17G121400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11361:SF35 - DNA MISMATCH REPAIR PROTEIN MSH2 Genomic Order:  1214
Name:  ? Glyma.17G121400 Secondary Identifier:  ? PAC:30482112
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G121400 0.5kb upstream 0.5kb upstream 12107   true Chr17: 9668479-9680585 Glycine max
Glyma.17G121400 0.5kb upstream 0.5kb upstream 500   false Chr17: 9680086-9680585 Glycine max
Glyma.17G121400 0.5kb downstream 0.5kb downstream 12107   true Chr17: 9667979-9680085 Glycine max
Glyma.17G121400 0.5kb downstream 0.5kb downstream 500   false Chr17: 9667979-9668478 Glycine max
Glyma.17G121400 1.0kb upstream 1.0kb upstream 12607   true Chr17: 9668479-9681085 Glycine max
Glyma.17G121400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 9680086-9681085 Glycine max
Glyma.17G121400 1.0kb downstream 1.0kb downstream 12607   true Chr17: 9667479-9680085 Glycine max
Glyma.17G121400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 9667479-9668478 Glycine max
Glyma.17G121400 2.0kb upstream 2.0kb upstream 13607   true Chr17: 9668479-9682085 Glycine max
Glyma.17G121400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 9680086-9682085 Glycine max
Glyma.17G121400 2.0kb downstream 2.0kb downstream 13607   true Chr17: 9666479-9680085 Glycine max
Glyma.17G121400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 9666479-9668478 Glycine max
Glyma.17G121400 5.0kb upstream 5.0kb upstream 16607   true Chr17: 9668479-9685085 Glycine max
Glyma.17G121400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 9680086-9685085 Glycine max
Glyma.17G121400 5.0kb downstream 5.0kb downstream 16607   true Chr17: 9663479-9680085 Glycine max
Glyma.17G121400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 9663479-9668478 Glycine max
Glyma.17G121400 10.0kb upstream 10.0kb upstream 21607   true Chr17: 9668479-9690085 Glycine max
Glyma.17G121400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 9680086-9690085 Glycine max
Glyma.17G121400 10.0kb downstream 10.0kb downstream 21607   true Chr17: 9658479-9680085 Glycine max
Glyma.17G121400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 9658479-9668478 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303400 5265 Fabidae View MSA
124060647 5270 Rosid View MSA
123740546 5271 Pentapetalae View MSA
122786206 5272 Eudicot View MSA
122042672 5273 Angiosperm View MSA
121343804 5274 Embryophyte View MSA
123423885 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.7716 0.0 13.0104    
cufflinks 10.6379 0.0 28.4143    
cufflinks 4.08922 0.0 11.236   Low
cufflinks 5.42817 0.0 14.6702    
cufflinks 12.3398 0.0 33.0598    
cufflinks 6.70291 0.0 17.9693    
cufflinks 7.7721 0.0 20.7714    
cufflinks 5.72085 0.0 15.4289    
cufflinks 23.3487 0.0 65.3096 High High
cufflinks 2.114        
cufflinks 1.11        
cufflinks 1.855        
cufflinks 3.353        
cufflinks 2.133        
cufflinks 17.025     High High
cufflinks 2.357        
cufflinks 0.857       Low
cufflinks 1.756        
cufflinks 4.21        
cufflinks 3.22        
cufflinks 0.835       Low
cufflinks 2.008        
cufflinks 2.328        
cufflinks 0.483       Low
cufflinks 2.7        
cufflinks 1.209        

0 Strain