Gene : Glyma.17G122700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR15835:SF2 - NUCLEAR-INTERACTING PARTNER OF ALK Genomic Order:  1227
Name:  ? Glyma.17G122700 Secondary Identifier:  ? PAC:30478933
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G122700 0.5kb upstream 0.5kb upstream 6181   true Chr17: 9804110-9810290 Glycine max
Glyma.17G122700 0.5kb upstream 0.5kb upstream 500   false Chr17: 9809791-9810290 Glycine max
Glyma.17G122700 0.5kb downstream 0.5kb downstream 6181   true Chr17: 9803610-9809790 Glycine max
Glyma.17G122700 0.5kb downstream 0.5kb downstream 500   false Chr17: 9803610-9804109 Glycine max
Glyma.17G122700 1.0kb upstream 1.0kb upstream 6681   true Chr17: 9804110-9810790 Glycine max
Glyma.17G122700 1.0kb upstream 1.0kb upstream 1000   false Chr17: 9809791-9810790 Glycine max
Glyma.17G122700 1.0kb downstream 1.0kb downstream 6681   true Chr17: 9803110-9809790 Glycine max
Glyma.17G122700 1.0kb downstream 1.0kb downstream 1000   false Chr17: 9803110-9804109 Glycine max
Glyma.17G122700 2.0kb upstream 2.0kb upstream 7681   true Chr17: 9804110-9811790 Glycine max
Glyma.17G122700 2.0kb upstream 2.0kb upstream 2000   false Chr17: 9809791-9811790 Glycine max
Glyma.17G122700 2.0kb downstream 2.0kb downstream 7681   true Chr17: 9802110-9809790 Glycine max
Glyma.17G122700 2.0kb downstream 2.0kb downstream 2000   false Chr17: 9802110-9804109 Glycine max
Glyma.17G122700 5.0kb upstream 5.0kb upstream 10681   true Chr17: 9804110-9814790 Glycine max
Glyma.17G122700 5.0kb upstream 5.0kb upstream 5000   false Chr17: 9809791-9814790 Glycine max
Glyma.17G122700 5.0kb downstream 5.0kb downstream 10681   true Chr17: 9799110-9809790 Glycine max
Glyma.17G122700 5.0kb downstream 5.0kb downstream 5000   false Chr17: 9799110-9804109 Glycine max
Glyma.17G122700 10.0kb upstream 10.0kb upstream 15681   true Chr17: 9804110-9819790 Glycine max
Glyma.17G122700 10.0kb upstream 10.0kb upstream 10000   false Chr17: 9809791-9819790 Glycine max
Glyma.17G122700 10.0kb downstream 10.0kb downstream 15681   true Chr17: 9794110-9809790 Glycine max
Glyma.17G122700 10.0kb downstream 10.0kb downstream 10000   false Chr17: 9794110-9804109 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305599 5265 Fabidae View MSA
124062210 5270 Rosid View MSA
123740172 5271 Pentapetalae View MSA
122787275 5272 Eudicot View MSA
122048012 5273 Angiosperm View MSA
121349794 5274 Embryophyte View MSA
123428489 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.97541 0.0 12.9692    
cufflinks 4.71173 0.0 16.7313    
cufflinks 3.74984 0.0 12.1293   Low
cufflinks 4.40177 0.0 14.0121    
cufflinks 4.21247 0.0 13.4116    
cufflinks 3.89883 0.0 11.7744    
cufflinks 5.20675 0.0 16.4248   High
cufflinks 4.89582 0.0 14.7059   High
cufflinks 3.91997 0.0 11.9002    
cufflinks 2.335        
cufflinks 0.884       Low
cufflinks 2.252        
cufflinks 2.736        
cufflinks 3.102       High
cufflinks 1.746        
cufflinks 2.255        
cufflinks 1.222       Low
cufflinks 2.602        
cufflinks 3.512       High
cufflinks 2.137        
cufflinks 1.347       Low
cufflinks 2.473        
cufflinks 2.008        
cufflinks 1.503        
cufflinks 2.34        
cufflinks 1.623        

0 Strain