Gene : Glyma.17G116500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21198 - GLUTAMATE RACEMASE Genomic Order:  1165
Name:  ? Glyma.17G116500 Secondary Identifier:  ? PAC:30480750
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G116500 0.5kb upstream 0.5kb upstream 2971   true Chr17: 9198927-9201897 Glycine max
Glyma.17G116500 0.5kb upstream 0.5kb upstream 500   false Chr17: 9198927-9199426 Glycine max
Glyma.17G116500 0.5kb downstream 0.5kb downstream 2971   true Chr17: 9199427-9202397 Glycine max
Glyma.17G116500 0.5kb downstream 0.5kb downstream 500   false Chr17: 9201898-9202397 Glycine max
Glyma.17G116500 1.0kb upstream 1.0kb upstream 3471   true Chr17: 9198427-9201897 Glycine max
Glyma.17G116500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 9198427-9199426 Glycine max
Glyma.17G116500 1.0kb downstream 1.0kb downstream 3471   true Chr17: 9199427-9202897 Glycine max
Glyma.17G116500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 9201898-9202897 Glycine max
Glyma.17G116500 2.0kb upstream 2.0kb upstream 4471   true Chr17: 9197427-9201897 Glycine max
Glyma.17G116500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 9197427-9199426 Glycine max
Glyma.17G116500 2.0kb downstream 2.0kb downstream 4471   true Chr17: 9199427-9203897 Glycine max
Glyma.17G116500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 9201898-9203897 Glycine max
Glyma.17G116500 5.0kb upstream 5.0kb upstream 7471   true Chr17: 9194427-9201897 Glycine max
Glyma.17G116500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 9194427-9199426 Glycine max
Glyma.17G116500 5.0kb downstream 5.0kb downstream 7471   true Chr17: 9199427-9206897 Glycine max
Glyma.17G116500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 9201898-9206897 Glycine max
Glyma.17G116500 10.0kb upstream 10.0kb upstream 12471   true Chr17: 9189427-9201897 Glycine max
Glyma.17G116500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 9189427-9199426 Glycine max
Glyma.17G116500 10.0kb downstream 10.0kb downstream 12471   true Chr17: 9199427-9211897 Glycine max
Glyma.17G116500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 9201898-9211897 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244196 5265 Fabidae Singleton cluster - no MSA
124070662 5270 Rosid View MSA
123749340 5271 Pentapetalae View MSA
122786043 5272 Eudicot View MSA
122047895 5273 Angiosperm View MSA
121310810 5274 Embryophyte View MSA
123348207 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.61494 0.0 22.8229   High
cufflinks 0.390565 0.0 3.28353    
cufflinks 0.934133 0.0 6.20013    
cufflinks 5.32659 0.0 20.9605   High
cufflinks 0.760327 0.0 4.73639    
cufflinks 0.257328 0.0 2.53705 Low Low
cufflinks 0.360246 0.0 2.27327    
cufflinks 4.88519 0.0 17.8684   High
cufflinks 0.433921 0.0 3.33504    
cufflinks 0.438        
cufflinks 0.023     Low Low
cufflinks 0.991       High
cufflinks 0.589       High
cufflinks 0.574       High
cufflinks 0.123        
cufflinks 0.097     Low  
cufflinks 0.105        
cufflinks 0.88       High
cufflinks 0.347        
cufflinks 0.08     Low  
cufflinks 0.017     Low Low
cufflinks 0.221        
cufflinks 0.198        
cufflinks 0.016     Low Low
cufflinks 0.107        
cufflinks 0.035     Low Low

0 Strain