Gene : Glyma.17G160600 G. max Wm82.a2.v1
Defline:  (1 of 24) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1606
Name:  ? Glyma.17G160600 Secondary Identifier:  ? PAC:30482247
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G160600 0.5kb upstream 0.5kb upstream 6715   true Chr17: 13948629-13955343 Glycine max
Glyma.17G160600 0.5kb upstream 0.5kb upstream 500   false Chr17: 13954844-13955343 Glycine max
Glyma.17G160600 0.5kb downstream 0.5kb downstream 6715   true Chr17: 13948129-13954843 Glycine max
Glyma.17G160600 0.5kb downstream 0.5kb downstream 500   false Chr17: 13948129-13948628 Glycine max
Glyma.17G160600 1.0kb upstream 1.0kb upstream 7215   true Chr17: 13948629-13955843 Glycine max
Glyma.17G160600 1.0kb upstream 1.0kb upstream 1000   false Chr17: 13954844-13955843 Glycine max
Glyma.17G160600 1.0kb downstream 1.0kb downstream 7215   true Chr17: 13947629-13954843 Glycine max
Glyma.17G160600 1.0kb downstream 1.0kb downstream 1000   false Chr17: 13947629-13948628 Glycine max
Glyma.17G160600 2.0kb upstream 2.0kb upstream 8215   true Chr17: 13948629-13956843 Glycine max
Glyma.17G160600 2.0kb upstream 2.0kb upstream 2000   false Chr17: 13954844-13956843 Glycine max
Glyma.17G160600 2.0kb downstream 2.0kb downstream 8215   true Chr17: 13946629-13954843 Glycine max
Glyma.17G160600 2.0kb downstream 2.0kb downstream 2000   false Chr17: 13946629-13948628 Glycine max
Glyma.17G160600 5.0kb upstream 5.0kb upstream 11215   true Chr17: 13948629-13959843 Glycine max
Glyma.17G160600 5.0kb upstream 5.0kb upstream 5000   false Chr17: 13954844-13959843 Glycine max
Glyma.17G160600 5.0kb downstream 5.0kb downstream 11215   true Chr17: 13943629-13954843 Glycine max
Glyma.17G160600 5.0kb downstream 5.0kb downstream 5000   false Chr17: 13943629-13948628 Glycine max
Glyma.17G160600 10.0kb upstream 10.0kb upstream 16215   true Chr17: 13948629-13964843 Glycine max
Glyma.17G160600 10.0kb upstream 10.0kb upstream 10000   false Chr17: 13954844-13964843 Glycine max
Glyma.17G160600 10.0kb downstream 10.0kb downstream 16215   true Chr17: 13938629-13954843 Glycine max
Glyma.17G160600 10.0kb downstream 10.0kb downstream 10000   false Chr17: 13938629-13948628 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299555 5265 Fabidae View MSA
124050394 5270 Rosid View MSA
123748612 5271 Pentapetalae View MSA
122791093 5272 Eudicot View MSA
122046985 5273 Angiosperm View MSA
121347235 5274 Embryophyte View MSA
123380515 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.475 0.0 12.218   High
cufflinks 2.54059 0.0 7.33008    
cufflinks 2.35928 0.0 6.84562    
cufflinks 1.98252 0.0 5.89618    
cufflinks 1.46246 0.0 4.54994    
cufflinks 0.752754 0.0 2.55835   Low
cufflinks 2.23571 0.0 6.55834    
cufflinks 1.80397 0.0 5.43791    
cufflinks 5.49978 0.0 14.8417   High
cufflinks 0.756        
cufflinks 0.471       Low
cufflinks 1.95        
cufflinks 0.741        
cufflinks 0.629        
cufflinks 0.917        
cufflinks 3.836       High
cufflinks 0.429       Low
cufflinks 1.939        
cufflinks 2.118        
cufflinks 5.953       High
cufflinks 0.463       Low
cufflinks 5.037       High
cufflinks 3.469        
cufflinks 0.597        
cufflinks 4.686       High
cufflinks 0.381       Low

0 Strain