Gene : Glyma.17G161300 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR24093:SF262 - CALCIUM-TRANSPORTING ATPASE 2, PLASMA MEMBRANE-TYPE-RELATED Genomic Order:  1613
Name:  ? Glyma.17G161300 Secondary Identifier:  ? PAC:30481417
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G161300 0.5kb upstream 0.5kb upstream 5812   true Chr17: 14013679-14019490 Glycine max
Glyma.17G161300 0.5kb upstream 0.5kb upstream 500   false Chr17: 14013679-14014178 Glycine max
Glyma.17G161300 0.5kb downstream 0.5kb downstream 5812   true Chr17: 14014179-14019990 Glycine max
Glyma.17G161300 0.5kb downstream 0.5kb downstream 500   false Chr17: 14019491-14019990 Glycine max
Glyma.17G161300 1.0kb upstream 1.0kb upstream 6312   true Chr17: 14013179-14019490 Glycine max
Glyma.17G161300 1.0kb upstream 1.0kb upstream 1000   false Chr17: 14013179-14014178 Glycine max
Glyma.17G161300 1.0kb downstream 1.0kb downstream 6312   true Chr17: 14014179-14020490 Glycine max
Glyma.17G161300 1.0kb downstream 1.0kb downstream 1000   false Chr17: 14019491-14020490 Glycine max
Glyma.17G161300 2.0kb upstream 2.0kb upstream 7312   true Chr17: 14012179-14019490 Glycine max
Glyma.17G161300 2.0kb upstream 2.0kb upstream 2000   false Chr17: 14012179-14014178 Glycine max
Glyma.17G161300 2.0kb downstream 2.0kb downstream 7312   true Chr17: 14014179-14021490 Glycine max
Glyma.17G161300 2.0kb downstream 2.0kb downstream 2000   false Chr17: 14019491-14021490 Glycine max
Glyma.17G161300 5.0kb upstream 5.0kb upstream 10312   true Chr17: 14009179-14019490 Glycine max
Glyma.17G161300 5.0kb upstream 5.0kb upstream 5000   false Chr17: 14009179-14014178 Glycine max
Glyma.17G161300 5.0kb downstream 5.0kb downstream 10312   true Chr17: 14014179-14024490 Glycine max
Glyma.17G161300 5.0kb downstream 5.0kb downstream 5000   false Chr17: 14019491-14024490 Glycine max
Glyma.17G161300 10.0kb upstream 10.0kb upstream 15312   true Chr17: 14004179-14019490 Glycine max
Glyma.17G161300 10.0kb upstream 10.0kb upstream 10000   false Chr17: 14004179-14014178 Glycine max
Glyma.17G161300 10.0kb downstream 10.0kb downstream 15312   true Chr17: 14014179-14029490 Glycine max
Glyma.17G161300 10.0kb downstream 10.0kb downstream 10000   false Chr17: 14019491-14029490 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296303 5265 Fabidae View MSA
124035597 5270 Rosid View MSA
123746765 5271 Pentapetalae View MSA
122788343 5272 Eudicot View MSA
122047165 5273 Angiosperm View MSA
121349207 5274 Embryophyte View MSA
123428805 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0274738 0.0 0.110793 Low  
cufflinks 0.0107024 0.0 0.0457135 Low  
cufflinks 0.61471 0.0 2.10859   High
cufflinks 0.0326 0.0 0.13052 Low  
cufflinks 0.00467292 0.0 0.0214682 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.00967466 0.0 0.0416678 Low  
cufflinks 0.0215945 0.0 0.0880072 Low  
cufflinks 0.016357 0.0 0.0677087 Low  
cufflinks 0.086     Low  
cufflinks 0.08        
cufflinks 0.422        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.032     Low  
cufflinks 0.143        
cufflinks 0.285        
cufflinks 3.683       High
cufflinks 0.005     Low Low
cufflinks 0.147        
cufflinks 0.025     Low  
cufflinks 0.182        
cufflinks 0.109        
cufflinks 0.05     Low  
cufflinks 0.112        
cufflinks 0.121        

0 Strain