Gene : Glyma.17G162900 G. max Wm82.a2.v1
Defline:  (1 of 5) PF00077//PF00098 - Retroviral aspartyl protease (RVP) // Zinc knuckle (zf-CCHC) Genomic Order:  1629
Name:  ? Glyma.17G162900 Secondary Identifier:  ? PAC:30480439
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G162900 0.5kb upstream 0.5kb upstream 6066   true Chr17: 14507198-14513263 Glycine max
Glyma.17G162900 0.5kb upstream 0.5kb upstream 500   false Chr17: 14507198-14507697 Glycine max
Glyma.17G162900 0.5kb downstream 0.5kb downstream 6066   true Chr17: 14507698-14513763 Glycine max
Glyma.17G162900 0.5kb downstream 0.5kb downstream 500   false Chr17: 14513264-14513763 Glycine max
Glyma.17G162900 1.0kb upstream 1.0kb upstream 6566   true Chr17: 14506698-14513263 Glycine max
Glyma.17G162900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 14506698-14507697 Glycine max
Glyma.17G162900 1.0kb downstream 1.0kb downstream 6566   true Chr17: 14507698-14514263 Glycine max
Glyma.17G162900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 14513264-14514263 Glycine max
Glyma.17G162900 2.0kb upstream 2.0kb upstream 7566   true Chr17: 14505698-14513263 Glycine max
Glyma.17G162900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 14505698-14507697 Glycine max
Glyma.17G162900 2.0kb downstream 2.0kb downstream 7566   true Chr17: 14507698-14515263 Glycine max
Glyma.17G162900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 14513264-14515263 Glycine max
Glyma.17G162900 5.0kb upstream 5.0kb upstream 10566   true Chr17: 14502698-14513263 Glycine max
Glyma.17G162900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 14502698-14507697 Glycine max
Glyma.17G162900 5.0kb downstream 5.0kb downstream 10566   true Chr17: 14507698-14518263 Glycine max
Glyma.17G162900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 14513264-14518263 Glycine max
Glyma.17G162900 10.0kb upstream 10.0kb upstream 15566   true Chr17: 14497698-14513263 Glycine max
Glyma.17G162900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 14497698-14507697 Glycine max
Glyma.17G162900 10.0kb downstream 10.0kb downstream 15566   true Chr17: 14507698-14523263 Glycine max
Glyma.17G162900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 14513264-14523263 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028362 5273 Angiosperm View MSA
122250435 5265 Fabidae View MSA
124040401 5270 Rosid View MSA
123751157 5271 Pentapetalae View MSA
122773930 5272 Eudicot View MSA
121297863 5274 Embryophyte View MSA
123335877 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.00364386 0.0 0.0174866 Low  
cufflinks 8.926E-5 0.0 0.00155904 Low Low
cufflinks 0.20359 0.0 0.761315 Low High
cufflinks 6.00416E-4 0.0 0.00437056 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.00131225 0.0 0.00708148 Low  
cufflinks 0.00161446 0.0 0.00850638 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain