Gene : Glyma.17G193500 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1935
Name:  ? Glyma.17G193500 Secondary Identifier:  ? PAC:30480708
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G193500 0.5kb upstream 0.5kb upstream 2251   true Chr17: 28313969-28316219 Glycine max
Glyma.17G193500 0.5kb upstream 0.5kb upstream 500   false Chr17: 28313969-28314468 Glycine max
Glyma.17G193500 0.5kb downstream 0.5kb downstream 2251   true Chr17: 28314469-28316719 Glycine max
Glyma.17G193500 0.5kb downstream 0.5kb downstream 500   false Chr17: 28316220-28316719 Glycine max
Glyma.17G193500 1.0kb upstream 1.0kb upstream 2751   true Chr17: 28313469-28316219 Glycine max
Glyma.17G193500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 28313469-28314468 Glycine max
Glyma.17G193500 1.0kb downstream 1.0kb downstream 2751   true Chr17: 28314469-28317219 Glycine max
Glyma.17G193500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 28316220-28317219 Glycine max
Glyma.17G193500 2.0kb upstream 2.0kb upstream 3751   true Chr17: 28312469-28316219 Glycine max
Glyma.17G193500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 28312469-28314468 Glycine max
Glyma.17G193500 2.0kb downstream 2.0kb downstream 3751   true Chr17: 28314469-28318219 Glycine max
Glyma.17G193500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 28316220-28318219 Glycine max
Glyma.17G193500 5.0kb upstream 5.0kb upstream 6751   true Chr17: 28309469-28316219 Glycine max
Glyma.17G193500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 28309469-28314468 Glycine max
Glyma.17G193500 5.0kb downstream 5.0kb downstream 6751   true Chr17: 28314469-28321219 Glycine max
Glyma.17G193500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 28316220-28321219 Glycine max
Glyma.17G193500 10.0kb upstream 10.0kb upstream 11751   true Chr17: 28304469-28316219 Glycine max
Glyma.17G193500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 28304469-28314468 Glycine max
Glyma.17G193500 10.0kb downstream 10.0kb downstream 11751   true Chr17: 28314469-28326219 Glycine max
Glyma.17G193500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 28316220-28326219 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250551 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.25875 0.0 8.77672    
cufflinks 1.93101 0.0 7.54314   Low
cufflinks 2.17272 0.0 8.43869    
cufflinks 2.58419 0.0 9.95816    
cufflinks 2.38842 0.0 9.2174    
cufflinks 3.13535 0.0 12.0094   High
cufflinks 2.49149 0.0 9.61169    
cufflinks 2.39672 0.0 9.25368    
cufflinks 2.00213 0.0 7.79014   Low
cufflinks 0.395       High
cufflinks 0.417       High
cufflinks 0.129        
cufflinks 0.393       High
cufflinks 0.284        
cufflinks 0.128        
cufflinks 0.143        
cufflinks 0.437       High
cufflinks 0.288        
cufflinks 0.075     Low Low
cufflinks 0.124        
cufflinks 0.24        
cufflinks 0.131        
cufflinks 0.188        
cufflinks 0.367        
cufflinks 0.102       Low
cufflinks 0.3        

0 Strain