Gene : Glyma.17G196400 G. max Wm82.a2.v1
Defline:  (1 of 1) PF01131//PF01396//PF13368 - DNA topoisomerase (Topoisom_bac) // Topoisomerase DNA binding C4 zinc finger (zf-C4_Topoisom) // Topoisomerase C-terminal repeat (Toprim_C_rpt) Genomic Order:  1964
Name:  ? Glyma.17G196400 Secondary Identifier:  ? PAC:30478445
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G196400 0.5kb upstream 0.5kb upstream 33983   true Chr17: 30693822-30727804 Glycine max
Glyma.17G196400 0.5kb upstream 0.5kb upstream 500   false Chr17: 30727305-30727804 Glycine max
Glyma.17G196400 0.5kb downstream 0.5kb downstream 33983   true Chr17: 30693322-30727304 Glycine max
Glyma.17G196400 0.5kb downstream 0.5kb downstream 500   false Chr17: 30693322-30693821 Glycine max
Glyma.17G196400 1.0kb upstream 1.0kb upstream 34483   true Chr17: 30693822-30728304 Glycine max
Glyma.17G196400 1.0kb upstream 1.0kb upstream 1000   false Chr17: 30727305-30728304 Glycine max
Glyma.17G196400 1.0kb downstream 1.0kb downstream 34483   true Chr17: 30692822-30727304 Glycine max
Glyma.17G196400 1.0kb downstream 1.0kb downstream 1000   false Chr17: 30692822-30693821 Glycine max
Glyma.17G196400 2.0kb upstream 2.0kb upstream 35483   true Chr17: 30693822-30729304 Glycine max
Glyma.17G196400 2.0kb upstream 2.0kb upstream 2000   false Chr17: 30727305-30729304 Glycine max
Glyma.17G196400 2.0kb downstream 2.0kb downstream 35483   true Chr17: 30691822-30727304 Glycine max
Glyma.17G196400 2.0kb downstream 2.0kb downstream 2000   false Chr17: 30691822-30693821 Glycine max
Glyma.17G196400 5.0kb upstream 5.0kb upstream 38483   true Chr17: 30693822-30732304 Glycine max
Glyma.17G196400 5.0kb upstream 5.0kb upstream 5000   false Chr17: 30727305-30732304 Glycine max
Glyma.17G196400 5.0kb downstream 5.0kb downstream 38483   true Chr17: 30688822-30727304 Glycine max
Glyma.17G196400 5.0kb downstream 5.0kb downstream 5000   false Chr17: 30688822-30693821 Glycine max
Glyma.17G196400 10.0kb upstream 10.0kb upstream 43483   true Chr17: 30693822-30737304 Glycine max
Glyma.17G196400 10.0kb upstream 10.0kb upstream 10000   false Chr17: 30727305-30737304 Glycine max
Glyma.17G196400 10.0kb downstream 10.0kb downstream 43483   true Chr17: 30683822-30727304 Glycine max
Glyma.17G196400 10.0kb downstream 10.0kb downstream 10000   false Chr17: 30683822-30693821 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028131 5273 Angiosperm View MSA
122244495 5265 Fabidae Singleton cluster - no MSA
124038728 5270 Rosid View MSA
123610954 5271 Pentapetalae View MSA
122645538 5272 Eudicot View MSA
121297669 5274 Embryophyte View MSA
123335701 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.90813 0.0 14.9429   High
cufflinks 5.08002 0.0 15.4095   High
cufflinks 3.61371 0.0 11.4239    
cufflinks 3.55999 0.0 11.333    
cufflinks 4.94284 0.0 15.0249   High
cufflinks 2.29585 0.0 7.7504   Low
cufflinks 2.9163 0.0 9.56866    
cufflinks 3.32994 0.0 10.7164    
cufflinks 3.96344 0.0 12.4428    
cufflinks 0.118       Low
cufflinks 0.124        
cufflinks 0.143        
cufflinks 0.16        
cufflinks 0.177        
cufflinks 0.118       Low
cufflinks 0.279       High
cufflinks 0.15        
cufflinks 0.199        
cufflinks 0.25        
cufflinks 0.24        
cufflinks 0.085       Low
cufflinks 0.244        
cufflinks 0.313       High
cufflinks 0.128        
cufflinks 0.254       High
cufflinks 0.158        

0 Strain