Gene : Glyma.17G200500 G. max Wm82.a2.v1
Defline:  (1 of 4) PF09341 - Transcription factor Pcc1 (Pcc1) Genomic Order:  2005
Name:  ? Glyma.17G200500 Secondary Identifier:  ? PAC:30479667
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G200500 0.5kb upstream 0.5kb upstream 11170   true Chr17: 31879765-31890934 Glycine max
Glyma.17G200500 0.5kb upstream 0.5kb upstream 500   false Chr17: 31879765-31880264 Glycine max
Glyma.17G200500 0.5kb downstream 0.5kb downstream 11170   true Chr17: 31880265-31891434 Glycine max
Glyma.17G200500 0.5kb downstream 0.5kb downstream 500   false Chr17: 31890935-31891434 Glycine max
Glyma.17G200500 1.0kb upstream 1.0kb upstream 11670   true Chr17: 31879265-31890934 Glycine max
Glyma.17G200500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 31879265-31880264 Glycine max
Glyma.17G200500 1.0kb downstream 1.0kb downstream 11670   true Chr17: 31880265-31891934 Glycine max
Glyma.17G200500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 31890935-31891934 Glycine max
Glyma.17G200500 2.0kb upstream 2.0kb upstream 12670   true Chr17: 31878265-31890934 Glycine max
Glyma.17G200500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 31878265-31880264 Glycine max
Glyma.17G200500 2.0kb downstream 2.0kb downstream 12670   true Chr17: 31880265-31892934 Glycine max
Glyma.17G200500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 31890935-31892934 Glycine max
Glyma.17G200500 5.0kb upstream 5.0kb upstream 15670   true Chr17: 31875265-31890934 Glycine max
Glyma.17G200500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 31875265-31880264 Glycine max
Glyma.17G200500 5.0kb downstream 5.0kb downstream 15670   true Chr17: 31880265-31895934 Glycine max
Glyma.17G200500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 31890935-31895934 Glycine max
Glyma.17G200500 10.0kb upstream 10.0kb upstream 20670   true Chr17: 31870265-31890934 Glycine max
Glyma.17G200500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 31870265-31880264 Glycine max
Glyma.17G200500 10.0kb downstream 10.0kb downstream 20670   true Chr17: 31880265-31900934 Glycine max
Glyma.17G200500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 31890935-31900934 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311807 5265 Fabidae View MSA
124050256 5270 Rosid View MSA
123736925 5271 Pentapetalae View MSA
122787092 5272 Eudicot View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.00728 0.0 26.7336    
cufflinks 10.3629 0.0 30.1186    
cufflinks 9.70259 0.0 28.4093    
cufflinks 8.70849 0.0 25.9139    
cufflinks 14.0576 0.0 39.5221    
cufflinks 19.0717 0.0 52.1826   High
cufflinks 8.25849 0.0 24.8102   Low
cufflinks 13.8153 0.0 38.8216    
cufflinks 12.0447 0.0 34.3461    
cufflinks 0.538        
cufflinks 0.493        
cufflinks 0.521        
cufflinks 1.083       High
cufflinks 1.012       High
cufflinks 0.3       Low
cufflinks 0.424        
cufflinks 0.398       Low
cufflinks 0.636        
cufflinks 0.591        
cufflinks 0.461        
cufflinks 0.51        
cufflinks 0.496        
cufflinks 0.673        
cufflinks 0.604        
cufflinks 0.438        
cufflinks 0.685        

0 Strain