Gene : Glyma.17G184500 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1845
Name:  ? Glyma.17G184500 Secondary Identifier:  ? PAC:30481502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G184500 0.5kb upstream 0.5kb upstream 2351   true Chr17: 23468956-23471306 Glycine max
Glyma.17G184500 0.5kb upstream 0.5kb upstream 500   false Chr17: 23468956-23469455 Glycine max
Glyma.17G184500 0.5kb downstream 0.5kb downstream 2351   true Chr17: 23469456-23471806 Glycine max
Glyma.17G184500 0.5kb downstream 0.5kb downstream 500   false Chr17: 23471307-23471806 Glycine max
Glyma.17G184500 1.0kb upstream 1.0kb upstream 2851   true Chr17: 23468456-23471306 Glycine max
Glyma.17G184500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 23468456-23469455 Glycine max
Glyma.17G184500 1.0kb downstream 1.0kb downstream 2851   true Chr17: 23469456-23472306 Glycine max
Glyma.17G184500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 23471307-23472306 Glycine max
Glyma.17G184500 2.0kb upstream 2.0kb upstream 3851   true Chr17: 23467456-23471306 Glycine max
Glyma.17G184500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 23467456-23469455 Glycine max
Glyma.17G184500 2.0kb downstream 2.0kb downstream 3851   true Chr17: 23469456-23473306 Glycine max
Glyma.17G184500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 23471307-23473306 Glycine max
Glyma.17G184500 5.0kb upstream 5.0kb upstream 6851   true Chr17: 23464456-23471306 Glycine max
Glyma.17G184500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 23464456-23469455 Glycine max
Glyma.17G184500 5.0kb downstream 5.0kb downstream 6851   true Chr17: 23469456-23476306 Glycine max
Glyma.17G184500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 23471307-23476306 Glycine max
Glyma.17G184500 10.0kb upstream 10.0kb upstream 11851   true Chr17: 23459456-23471306 Glycine max
Glyma.17G184500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 23459456-23469455 Glycine max
Glyma.17G184500 10.0kb downstream 10.0kb downstream 11851   true Chr17: 23469456-23481306 Glycine max
Glyma.17G184500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 23471307-23481306 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250551 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.03636 0.0 4.41643    
cufflinks 0.980384 0.0 4.18754    
cufflinks 1.46437 0.0 6.04112    
cufflinks 0.248148 0.0 1.19309    
cufflinks 2.45305 0.0 9.82182    
cufflinks 8.96906E-5 0.0 0.0131699 Low Low
cufflinks 1.908 0.0 7.73841    
cufflinks 0.869332 0.0 3.707    
cufflinks 0.449646 0.0 2.03374    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain