Gene : Glyma.17G186800 G. max Wm82.a2.v1
Defline:  (1 of 1) PF10458 - Valyl tRNA synthetase tRNA binding arm (Val_tRNA-synt_C) Genomic Order:  1868
Name:  ? Glyma.17G186800 Secondary Identifier:  ? PAC:30482545
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G186800 0.5kb upstream 0.5kb upstream 8209   true Chr17: 23796924-23805132 Glycine max
Glyma.17G186800 0.5kb upstream 0.5kb upstream 500   false Chr17: 23804633-23805132 Glycine max
Glyma.17G186800 0.5kb downstream 0.5kb downstream 8209   true Chr17: 23796424-23804632 Glycine max
Glyma.17G186800 0.5kb downstream 0.5kb downstream 500   false Chr17: 23796424-23796923 Glycine max
Glyma.17G186800 1.0kb upstream 1.0kb upstream 8709   true Chr17: 23796924-23805632 Glycine max
Glyma.17G186800 1.0kb upstream 1.0kb upstream 1000   false Chr17: 23804633-23805632 Glycine max
Glyma.17G186800 1.0kb downstream 1.0kb downstream 8709   true Chr17: 23795924-23804632 Glycine max
Glyma.17G186800 1.0kb downstream 1.0kb downstream 1000   false Chr17: 23795924-23796923 Glycine max
Glyma.17G186800 2.0kb upstream 2.0kb upstream 9709   true Chr17: 23796924-23806632 Glycine max
Glyma.17G186800 2.0kb upstream 2.0kb upstream 2000   false Chr17: 23804633-23806632 Glycine max
Glyma.17G186800 2.0kb downstream 2.0kb downstream 9709   true Chr17: 23794924-23804632 Glycine max
Glyma.17G186800 2.0kb downstream 2.0kb downstream 2000   false Chr17: 23794924-23796923 Glycine max
Glyma.17G186800 5.0kb upstream 5.0kb upstream 12709   true Chr17: 23796924-23809632 Glycine max
Glyma.17G186800 5.0kb upstream 5.0kb upstream 5000   false Chr17: 23804633-23809632 Glycine max
Glyma.17G186800 5.0kb downstream 5.0kb downstream 12709   true Chr17: 23791924-23804632 Glycine max
Glyma.17G186800 5.0kb downstream 5.0kb downstream 5000   false Chr17: 23791924-23796923 Glycine max
Glyma.17G186800 10.0kb upstream 10.0kb upstream 17709   true Chr17: 23796924-23814632 Glycine max
Glyma.17G186800 10.0kb upstream 10.0kb upstream 10000   false Chr17: 23804633-23814632 Glycine max
Glyma.17G186800 10.0kb downstream 10.0kb downstream 17709   true Chr17: 23786924-23804632 Glycine max
Glyma.17G186800 10.0kb downstream 10.0kb downstream 10000   false Chr17: 23786924-23796923 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313022 5265 Fabidae View MSA
124039952 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7589 0.0 52.2663   High
cufflinks 6.94857 0.0 34.0598    
cufflinks 7.78222 0.0 35.9864    
cufflinks 5.97522 0.0 31.6472    
cufflinks 4.84931 0.0 22.7656    
cufflinks 3.32334 0.0 15.4008   Low
cufflinks 5.64757 0.0 27.4471    
cufflinks 3.98327 0.0 22.5356   Low
cufflinks 7.15135 0.0 35.9218    
cufflinks 0.402        
cufflinks 0.308        
cufflinks 0.763        
cufflinks 0.432        
cufflinks 0.403        
cufflinks 0.958        
cufflinks 2.328       High
cufflinks 0.266       Low
cufflinks 0.675        
cufflinks 0.846        
cufflinks 2.708       High
cufflinks 0.266       Low
cufflinks 2.456       High
cufflinks 1.956       High
cufflinks 0.23       Low
cufflinks 2.615       High
cufflinks 0.346        

0 Strain