Gene : Glyma.17G176300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR19878:SF4 - TRANSDUCIN/WD40 DOMAIN-CONTAINING PROTEIN Genomic Order:  1763
Name:  ? Glyma.17G176300 Secondary Identifier:  ? PAC:30478786
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G176300 0.5kb upstream 0.5kb upstream 20948   true Chr17: 18700548-18721495 Glycine max
Glyma.17G176300 0.5kb upstream 0.5kb upstream 500   false Chr17: 18700548-18701047 Glycine max
Glyma.17G176300 0.5kb downstream 0.5kb downstream 20948   true Chr17: 18701048-18721995 Glycine max
Glyma.17G176300 0.5kb downstream 0.5kb downstream 500   false Chr17: 18721496-18721995 Glycine max
Glyma.17G176300 1.0kb upstream 1.0kb upstream 21448   true Chr17: 18700048-18721495 Glycine max
Glyma.17G176300 1.0kb upstream 1.0kb upstream 1000   false Chr17: 18700048-18701047 Glycine max
Glyma.17G176300 1.0kb downstream 1.0kb downstream 21448   true Chr17: 18701048-18722495 Glycine max
Glyma.17G176300 1.0kb downstream 1.0kb downstream 1000   false Chr17: 18721496-18722495 Glycine max
Glyma.17G176300 2.0kb upstream 2.0kb upstream 22448   true Chr17: 18699048-18721495 Glycine max
Glyma.17G176300 2.0kb upstream 2.0kb upstream 2000   false Chr17: 18699048-18701047 Glycine max
Glyma.17G176300 2.0kb downstream 2.0kb downstream 22448   true Chr17: 18701048-18723495 Glycine max
Glyma.17G176300 2.0kb downstream 2.0kb downstream 2000   false Chr17: 18721496-18723495 Glycine max
Glyma.17G176300 5.0kb upstream 5.0kb upstream 25448   true Chr17: 18696048-18721495 Glycine max
Glyma.17G176300 5.0kb upstream 5.0kb upstream 5000   false Chr17: 18696048-18701047 Glycine max
Glyma.17G176300 5.0kb downstream 5.0kb downstream 25448   true Chr17: 18701048-18726495 Glycine max
Glyma.17G176300 5.0kb downstream 5.0kb downstream 5000   false Chr17: 18721496-18726495 Glycine max
Glyma.17G176300 10.0kb upstream 10.0kb upstream 30448   true Chr17: 18691048-18721495 Glycine max
Glyma.17G176300 10.0kb upstream 10.0kb upstream 10000   false Chr17: 18691048-18701047 Glycine max
Glyma.17G176300 10.0kb downstream 10.0kb downstream 30448   true Chr17: 18701048-18731495 Glycine max
Glyma.17G176300 10.0kb downstream 10.0kb downstream 10000   false Chr17: 18721496-18731495 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305662 5265 Fabidae View MSA
124050225 5270 Rosid View MSA
123737752 5271 Pentapetalae View MSA
122788494 5272 Eudicot View MSA
122042112 5273 Angiosperm View MSA
121345827 5274 Embryophyte View MSA
123428290 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.8183 0.0 35.4078    
cufflinks 12.7508 0.0 35.226    
cufflinks 11.6203 0.0 31.922   Low
cufflinks 19.2353 0.0 55.7369   High
cufflinks 15.6995 0.0 44.2688    
cufflinks 12.2312 0.0 33.6867    
cufflinks 17.8998 0.0 51.2238   High
cufflinks 14.7249 0.0 41.3076    
cufflinks 13.7671 0.0 38.3296    
cufflinks 5.634       High
cufflinks 1.59       Low
cufflinks 4.48        
cufflinks 5.338       High
cufflinks 5.323       High
cufflinks 1.872       Low
cufflinks 3.317        
cufflinks 2.669        
cufflinks 5.335       High
cufflinks 5.121       High
cufflinks 2.911        
cufflinks 2.45        
cufflinks 3.326        
cufflinks 2.87        
cufflinks 2.182       Low
cufflinks 3.025        
cufflinks 2.965        

0 Strain