Gene : Glyma.17G178500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31003//PTHR31003:SF2 - MYB FAMILY TRANSCRIPTION FACTOR Genomic Order:  1785
Name:  ? Glyma.17G178500 Secondary Identifier:  ? PAC:30481163
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G178500 0.5kb upstream 0.5kb upstream 4925   true Chr17: 19324290-19329214 Glycine max
Glyma.17G178500 0.5kb upstream 0.5kb upstream 500   false Chr17: 19328715-19329214 Glycine max
Glyma.17G178500 0.5kb downstream 0.5kb downstream 4925   true Chr17: 19323790-19328714 Glycine max
Glyma.17G178500 0.5kb downstream 0.5kb downstream 500   false Chr17: 19323790-19324289 Glycine max
Glyma.17G178500 1.0kb upstream 1.0kb upstream 5425   true Chr17: 19324290-19329714 Glycine max
Glyma.17G178500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 19328715-19329714 Glycine max
Glyma.17G178500 1.0kb downstream 1.0kb downstream 5425   true Chr17: 19323290-19328714 Glycine max
Glyma.17G178500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 19323290-19324289 Glycine max
Glyma.17G178500 2.0kb upstream 2.0kb upstream 6425   true Chr17: 19324290-19330714 Glycine max
Glyma.17G178500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 19328715-19330714 Glycine max
Glyma.17G178500 2.0kb downstream 2.0kb downstream 6425   true Chr17: 19322290-19328714 Glycine max
Glyma.17G178500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 19322290-19324289 Glycine max
Glyma.17G178500 5.0kb upstream 5.0kb upstream 9425   true Chr17: 19324290-19333714 Glycine max
Glyma.17G178500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 19328715-19333714 Glycine max
Glyma.17G178500 5.0kb downstream 5.0kb downstream 9425   true Chr17: 19319290-19328714 Glycine max
Glyma.17G178500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 19319290-19324289 Glycine max
Glyma.17G178500 10.0kb upstream 10.0kb upstream 14425   true Chr17: 19324290-19338714 Glycine max
Glyma.17G178500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 19328715-19338714 Glycine max
Glyma.17G178500 10.0kb downstream 10.0kb downstream 14425   true Chr17: 19314290-19328714 Glycine max
Glyma.17G178500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 19314290-19324289 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312255 5265 Fabidae View MSA
124066907 5270 Rosid View MSA
123742212 5271 Pentapetalae View MSA
122792121 5272 Eudicot View MSA
122049766 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350891 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.321963 0.0 1.53819   Low
cufflinks 2.79097 0.0 15.4048    
cufflinks 0.442515 0.0 2.19545    
cufflinks 1.80617 0.0 11.2674    
cufflinks 7.22798 0.0 32.1106   High
cufflinks 2.83844 0.0 16.7082    
cufflinks 0.323173 0.0 2.19407   Low
cufflinks 0.533682 0.0 2.63729    
cufflinks 4.52888 0.0 21.0342   High
cufflinks 0.044     Low Low
cufflinks 0.136        
cufflinks 0.31       High
cufflinks 0.791       High
cufflinks 0.191        
cufflinks 0.276        
cufflinks 0.063     Low  
cufflinks 0.036     Low Low
cufflinks 0.45       High
cufflinks 0.174        
cufflinks 0.073     Low  
cufflinks 0.075        
cufflinks 0.076     Low  
cufflinks 0.071     Low  
cufflinks 0.057     Low  
cufflinks 0.089     Low  
cufflinks 0.051     Low  

0 Strain