Gene : Glyma.17G231300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11538:SF40 - PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT Genomic Order:  2313
Name:  ? Glyma.17G231300 Secondary Identifier:  ? PAC:30480182
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G231300 0.5kb upstream 0.5kb upstream 9381   true Chr17: 38625582-38634962 Glycine max
Glyma.17G231300 0.5kb upstream 0.5kb upstream 500   false Chr17: 38634463-38634962 Glycine max
Glyma.17G231300 0.5kb downstream 0.5kb downstream 9381   true Chr17: 38625082-38634462 Glycine max
Glyma.17G231300 0.5kb downstream 0.5kb downstream 500   false Chr17: 38625082-38625581 Glycine max
Glyma.17G231300 1.0kb upstream 1.0kb upstream 9881   true Chr17: 38625582-38635462 Glycine max
Glyma.17G231300 1.0kb upstream 1.0kb upstream 1000   false Chr17: 38634463-38635462 Glycine max
Glyma.17G231300 1.0kb downstream 1.0kb downstream 9881   true Chr17: 38624582-38634462 Glycine max
Glyma.17G231300 1.0kb downstream 1.0kb downstream 1000   false Chr17: 38624582-38625581 Glycine max
Glyma.17G231300 2.0kb upstream 2.0kb upstream 10881   true Chr17: 38625582-38636462 Glycine max
Glyma.17G231300 2.0kb upstream 2.0kb upstream 2000   false Chr17: 38634463-38636462 Glycine max
Glyma.17G231300 2.0kb downstream 2.0kb downstream 10881   true Chr17: 38623582-38634462 Glycine max
Glyma.17G231300 2.0kb downstream 2.0kb downstream 2000   false Chr17: 38623582-38625581 Glycine max
Glyma.17G231300 5.0kb upstream 5.0kb upstream 13881   true Chr17: 38625582-38639462 Glycine max
Glyma.17G231300 5.0kb upstream 5.0kb upstream 5000   false Chr17: 38634463-38639462 Glycine max
Glyma.17G231300 5.0kb downstream 5.0kb downstream 13881   true Chr17: 38620582-38634462 Glycine max
Glyma.17G231300 5.0kb downstream 5.0kb downstream 5000   false Chr17: 38620582-38625581 Glycine max
Glyma.17G231300 10.0kb upstream 10.0kb upstream 18881   true Chr17: 38625582-38644462 Glycine max
Glyma.17G231300 10.0kb upstream 10.0kb upstream 10000   false Chr17: 38634463-38644462 Glycine max
Glyma.17G231300 10.0kb downstream 10.0kb downstream 18881   true Chr17: 38615582-38634462 Glycine max
Glyma.17G231300 10.0kb downstream 10.0kb downstream 10000   false Chr17: 38615582-38625581 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121611232 5273 Angiosperm Singleton cluster - no MSA
122244268 5265 Fabidae Singleton cluster - no MSA
123988618 5270 Rosid Singleton cluster - no MSA
123563784 5271 Pentapetalae Singleton cluster - no MSA
122598559 5272 Eudicot Singleton cluster - no MSA
120883465 5274 Embryophyte Singleton cluster - no MSA
122924286 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.08296 0.0 17.9692    
cufflinks 6.38588 0.0 35.0593   High
cufflinks 3.21886 0.0 20.648    
cufflinks 3.50403 0.0 21.4944    
cufflinks 2.96034 0.0 15.9252    
cufflinks 1.79198 0.0 8.54405   Low
cufflinks 2.85295 0.0 16.108    
cufflinks 4.39545 0.0 24.4405    
cufflinks 3.59236 0.0 22.2828    
cufflinks 0.181        
cufflinks 0.053     Low Low
cufflinks 0.406        
cufflinks 0.18        
cufflinks 0.204        
cufflinks 0.184        
cufflinks 0.377        
cufflinks 0.175        
cufflinks 0.598       High
cufflinks 0.438        
cufflinks 0.465        
cufflinks 0.049     Low Low
cufflinks 0.488        
cufflinks 0.346        
cufflinks 0.042     Low Low
cufflinks 0.42        
cufflinks 0.093        

0 Strain