Gene : Glyma.17G232000 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11079:SF74 - RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 4 Genomic Order:  2320
Name:  ? Glyma.17G232000 Secondary Identifier:  ? PAC:30482230
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G232000 0.5kb upstream 0.5kb upstream 13535   true Chr17: 38689158-38702692 Glycine max
Glyma.17G232000 0.5kb upstream 0.5kb upstream 500   false Chr17: 38689158-38689657 Glycine max
Glyma.17G232000 0.5kb downstream 0.5kb downstream 13535   true Chr17: 38689658-38703192 Glycine max
Glyma.17G232000 0.5kb downstream 0.5kb downstream 500   false Chr17: 38702693-38703192 Glycine max
Glyma.17G232000 1.0kb upstream 1.0kb upstream 14035   true Chr17: 38688658-38702692 Glycine max
Glyma.17G232000 1.0kb upstream 1.0kb upstream 1000   false Chr17: 38688658-38689657 Glycine max
Glyma.17G232000 1.0kb downstream 1.0kb downstream 14035   true Chr17: 38689658-38703692 Glycine max
Glyma.17G232000 1.0kb downstream 1.0kb downstream 1000   false Chr17: 38702693-38703692 Glycine max
Glyma.17G232000 2.0kb upstream 2.0kb upstream 15035   true Chr17: 38687658-38702692 Glycine max
Glyma.17G232000 2.0kb upstream 2.0kb upstream 2000   false Chr17: 38687658-38689657 Glycine max
Glyma.17G232000 2.0kb downstream 2.0kb downstream 15035   true Chr17: 38689658-38704692 Glycine max
Glyma.17G232000 2.0kb downstream 2.0kb downstream 2000   false Chr17: 38702693-38704692 Glycine max
Glyma.17G232000 5.0kb upstream 5.0kb upstream 18035   true Chr17: 38684658-38702692 Glycine max
Glyma.17G232000 5.0kb upstream 5.0kb upstream 5000   false Chr17: 38684658-38689657 Glycine max
Glyma.17G232000 5.0kb downstream 5.0kb downstream 18035   true Chr17: 38689658-38707692 Glycine max
Glyma.17G232000 5.0kb downstream 5.0kb downstream 5000   false Chr17: 38702693-38707692 Glycine max
Glyma.17G232000 10.0kb upstream 10.0kb upstream 23035   true Chr17: 38679658-38702692 Glycine max
Glyma.17G232000 10.0kb upstream 10.0kb upstream 10000   false Chr17: 38679658-38689657 Glycine max
Glyma.17G232000 10.0kb downstream 10.0kb downstream 23035   true Chr17: 38689658-38712692 Glycine max
Glyma.17G232000 10.0kb downstream 10.0kb downstream 10000   false Chr17: 38702693-38712692 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301863 5265 Fabidae View MSA
124068142 5270 Rosid View MSA
123740880 5271 Pentapetalae View MSA
122787515 5272 Eudicot View MSA
122044797 5273 Angiosperm View MSA
121348863 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.09144 0.0 4.58379    
cufflinks 2.32976 0.0 7.98257    
cufflinks 1.2729 0.0 5.10084    
cufflinks 2.29355 0.0 7.91156    
cufflinks 1.59658 0.0 8.73195    
cufflinks 0.562772 0.0 2.19119   Low
cufflinks 2.69649 0.0 8.94006   High
cufflinks 1.76667 0.0 6.4874    
cufflinks 1.78454 0.0 6.59521    
cufflinks 0.13        
cufflinks 0.202        
cufflinks 0.159        
cufflinks 0.163        
cufflinks 0.185        
cufflinks 0.142        
cufflinks 0.112       Low
cufflinks 0.471       High
cufflinks 0.166        
cufflinks 0.223        
cufflinks 0.127        
cufflinks 0.313       High
cufflinks 0.109       Low
cufflinks 0.132        
cufflinks 0.145        
cufflinks 0.125        
cufflinks 0.271       High

0 Strain